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The map label for this gene is 187932352

Identifier: 187932352

GI number: 187932352

Start: 2373496

End: 2374059

Strand: Reverse

Name: 187932352

Synonym: CLL_A2303

Alternate gene names: NA

Gene position: 2374059-2373496 (Counterclockwise)

Preceding gene: 187933293

Following gene: 187935280

Centisome position: 62.47

GC content: 26.24

Gene sequence:

>564_bases
ATGACTATCGATGAAGATAATTTTTTATCAGAACTTAAAAAAAGAAATACTAAAGCTTTAGAATATATAATAAATACTTA
TTCCAATTTAGTTTTTAAAGTAGTTATAAATGTTTTAGGATATGATAATTATGAAAGTGCTAAGGAGTGCCTTAATGATA
TATACCTCTTAGTATGGAATAAGCATCAGTTATATAACCAACAGAAGGCTTCTTTTAAAAACTGGCTCTTAGCTGTCGCT
AAGTATAAGGCTATAGACTATAAAAGAAGTTTAAAACCGTCAAATAATGTTCCTATTGAAGATGAGGTTTTATTTTCTTC
AAATAATATTGAACATGAATATATTCTCAAGGAAAAGAAAAATGAATTACTTGAGCTATTAGATAATGAAAGTAAAGCTG
ATAGAGAAATATTCATAAGAAAATACATTTTTGATGAGGATATAGATAACATAACTAAGAAATTTAACTTGTCCAAAGGT
GCAGTTTACAACAGGTTATGGAGAACAAGAAATTCTATTATAGAAAAACTTAATGTTTCATATAAAAAGGAGGAAGCAAA
ATGA

Upstream 100 bases:

>100_bases
TTATTTATAGAAAGCATAAATTTTAATATTTGTTGTGAAGTATCTTGTTATTGCTTCGTATTTATAGATGAAAGGTACAA
AATAAGAAAGGAGTTAAGAA

Downstream 100 bases:

>100_bases
AACCAGATTTTAATGAAGATGAAATTTTAGCTCTGTTAAATGATGTTACGATTACAGAGGATGAATTAAGCCCTTTGGAA
TTTAATGATATAGAAAAGAG

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor Family; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-70factor; RNA Polymerase

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MTIDEDNFLSELKKRNTKALEYIINTYSNLVFKVVINVLGYDNYESAKECLNDIYLLVWNKHQLYNQQKASFKNWLLAVA
KYKAIDYKRSLKPSNNVPIEDEVLFSSNNIEHEYILKEKKNELLELLDNESKADREIFIRKYIFDEDIDNITKKFNLSKG
AVYNRLWRTRNSIIEKLNVSYKKEEAK

Sequences:

>Translated_187_residues
MTIDEDNFLSELKKRNTKALEYIINTYSNLVFKVVINVLGYDNYESAKECLNDIYLLVWNKHQLYNQQKASFKNWLLAVA
KYKAIDYKRSLKPSNNVPIEDEVLFSSNNIEHEYILKEKKNELLELLDNESKADREIFIRKYIFDEDIDNITKKFNLSKG
AVYNRLWRTRNSIIEKLNVSYKKEEAK
>Mature_186_residues
TIDEDNFLSELKKRNTKALEYIINTYSNLVFKVVINVLGYDNYESAKECLNDIYLLVWNKHQLYNQQKASFKNWLLAVAK
YKAIDYKRSLKPSNNVPIEDEVLFSSNNIEHEYILKEKKNELLELLDNESKADREIFIRKYIFDEDIDNITKKFNLSKGA
VYNRLWRTRNSIIEKLNVSYKKEEAK

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22291; Mature: 22159

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIDEDNFLSELKKRNTKALEYIINTYSNLVFKVVINVLGYDNYESAKECLNDIYLLVWN
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEC
KHQLYNQQKASFKNWLLAVAKYKAIDYKRSLKPSNNVPIEDEVLFSSNNIEHEYILKEKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCHHHHHHHHH
NELLELLDNESKADREIFIRKYIFDEDIDNITKKFNLSKGAVYNRLWRTRNSIIEKLNVS
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
YKKEEAK
HHHCCCC
>Mature Secondary Structure 
TIDEDNFLSELKKRNTKALEYIINTYSNLVFKVVINVLGYDNYESAKECLNDIYLLVWN
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEC
KHQLYNQQKASFKNWLLAVAKYKAIDYKRSLKPSNNVPIEDEVLFSSNNIEHEYILKEKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCHHHHHHHHH
NELLELLDNESKADREIFIRKYIFDEDIDNITKKFNLSKGAVYNRLWRTRNSIIEKLNVS
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
YKKEEAK
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA