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The map label for this gene is bkdR [H]

Identifier: 187930612

GI number: 187930612

Start: 3716955

End: 3717431

Strand: Reverse

Name: bkdR [H]

Synonym: Rpic_3548

Alternate gene names: 187930612

Gene position: 3717431-3716955 (Counterclockwise)

Preceding gene: 187930615

Following gene: 187930611

Centisome position: 94.29

GC content: 64.36

Gene sequence:

>477_bases
ATGATTTCGCTTGATACCTTCGATCTGGCTCTGCTGGCGGCCCTTCAGCGCGATGGCCGTGCGACGCATCAGCAGCTCTC
GGAGCAAGTCCACCTGTCGGCCAGCCAAGTCGGGCGGCGCCTGGCGCGGCTTGAATCGGAAGGCGTGATCGAGGGCTACC
GGGTGGTGCTCTCGCCGACCGGGCTGGGGCTGGGCGTGACGGTGTTCGCGAGCGTCAAGCTGGCGCACCACGGCGACGCC
ATCGTCGAACGCTTTCATGAAGAGATCAGCCTGCTCGACGCGGTGCAGGAGTGCTATTCGGTGGCGGGCGACGCCGACTA
CATGCTGCGCGTGGTGGTGCCCGATCTGCCCGCGCTGTCGGAATTCGTCATGCGCAAGCTGATGCGTGTGCCGGGTGTGG
ACAATGTACGTTCCAATATCGTACTGACGGCCTTGAAGCGGGATGGCGCGTTGCCGCTATCCCACCTTGGTGGGTAG

Upstream 100 bases:

>100_bases
GTATGGGCGGGGCCACGCGGGTTGCCCGCAAAACGGCGATCCATTGCGCCTAGTTTGCGGAAATCATGCAGAATGCCGCT
TGTGAACGCAGGAGACGTGC

Downstream 100 bases:

>100_bases
ATTCGCGCCTTGCGCCAGGGTGCGCGGCGTGTCACGCTGCAAGCCGACATCCCTTGCTGATATGAATCGCCTCTCTTGGG
CGGGAGACCACGATGGTTGA

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MISLDTFDLALLAALQRDGRATHQQLSEQVHLSASQVGRRLARLESEGVIEGYRVVLSPTGLGLGVTVFASVKLAHHGDA
IVERFHEEISLLDAVQECYSVAGDADYMLRVVVPDLPALSEFVMRKLMRVPGVDNVRSNIVLTALKRDGALPLSHLGG

Sequences:

>Translated_158_residues
MISLDTFDLALLAALQRDGRATHQQLSEQVHLSASQVGRRLARLESEGVIEGYRVVLSPTGLGLGVTVFASVKLAHHGDA
IVERFHEEISLLDAVQECYSVAGDADYMLRVVVPDLPALSEFVMRKLMRVPGVDNVRSNIVLTALKRDGALPLSHLGG
>Mature_158_residues
MISLDTFDLALLAALQRDGRATHQQLSEQVHLSASQVGRRLARLESEGVIEGYRVVLSPTGLGLGVTVFASVKLAHHGDA
IVERFHEEISLLDAVQECYSVAGDADYMLRVVVPDLPALSEFVMRKLMRVPGVDNVRSNIVLTALKRDGALPLSHLGG

Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787116, Length=148, Percent_Identity=35.8108108108108, Blast_Score=108, Evalue=1e-25,
Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=35.3333333333333, Blast_Score=100, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 17125; Mature: 17125

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISLDTFDLALLAALQRDGRATHQQLSEQVHLSASQVGRRLARLESEGVIEGYRVVLSPT
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
GLGLGVTVFASVKLAHHGDAIVERFHEEISLLDAVQECYSVAGDADYMLRVVVPDLPALS
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCCCCHHH
EFVMRKLMRVPGVDNVRSNIVLTALKRDGALPLSHLGG
HHHHHHHHHCCCCCCCHHHHEEEEECCCCCCCHHHCCC
>Mature Secondary Structure
MISLDTFDLALLAALQRDGRATHQQLSEQVHLSASQVGRRLARLESEGVIEGYRVVLSPT
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
GLGLGVTVFASVKLAHHGDAIVERFHEEISLLDAVQECYSVAGDADYMLRVVVPDLPALS
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCCCCHHH
EFVMRKLMRVPGVDNVRSNIVLTALKRDGALPLSHLGG
HHHHHHHHHCCCCCCCHHHHEEEEECCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8320210 [H]