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The map label for this gene is ompW [H]

Identifier: 187930609

GI number: 187930609

Start: 3714138

End: 3714857

Strand: Reverse

Name: ompW [H]

Synonym: Rpic_3545

Alternate gene names: 187930609

Gene position: 3714857-3714138 (Counterclockwise)

Preceding gene: 187930610

Following gene: 187930607

Centisome position: 94.22

GC content: 61.67

Gene sequence:

>720_bases
ATGGCCTATAAAAAAGCACTGGCGGCTGCCGCCGGGATGATCCTCGCCACCGCCGCGCACGCACAAGCTGCCGGCAGCAA
CATCGTCAGCCTCGGCTGGTTCCGCGTGATGCCGAATAGCTCGAGCGACCCGCTGGTGGTCAAGAGCATCGGCGGTATCC
CGGTGAATCAGTCGCAGTCCGGCACGGGCGCCAAGATTCAGGAAGCCGATACCGTTGGTCTCGCCTTCACGCATTTCTTT
ACCGACAACGTTGCCGTTGAACTGGTGGGTGGCATTCCGCCGCGCCACAAGATCGAAGGGACGGGCGCGCTGTCGGGTTA
CGGCGAAATCGGCTCGGCCAAGCAATGGAGCCCGGCCGTGCTGGCGAAGTGGTACTTCTTCAACGCCGACACCAAGTTCC
GTCCGTACGTGGGTCTGGGCCTGAACTACACCTGGTTCTCCGACGAGAAGATCACGAACAGCGCCTTCCAGACGAAGCTG
GCTGGCCCGGGCAGCAAGAGCAACGTGTCGACCGACGGTTCGTTGAACCCGGTGCTGAACGTGGGTGCTACGTACGCCAT
CACCAAGGACTGGTTCGTTGGCCTGTCGGTGTCGTACCTGCCGCTCAAGACCACGGCAACGATCGACAGCACTACGGCGA
CCGGCGTCCACGTCGTGAGCGAAGCGAAGATCAAGATCAACCCGGTCGTGACCTTCCTGAACGTCGGCTACCGCTTCTAA

Upstream 100 bases:

>100_bases
ATAATGGCCATCCCTTCCGCCTGGGAGGAGACGTAGAGCGCACCGCAACGTATTGATCACGTTTACGTCGGATGCGTCTG
ACACAGGAGCACATATAGAG

Downstream 100 bases:

>100_bases
GCGGCTTCCGCGTCAACAAAAAGGCGTGCCACAGCGGCACGCCTTTTTTGTTGCCAACGCCCGGCTCAGGCGGAAGATTT
GACCGGGTAGCCGGCTTGCT

Product: OmpW family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MAYKKALAAAAGMILATAAHAQAAGSNIVSLGWFRVMPNSSSDPLVVKSIGGIPVNQSQSGTGAKIQEADTVGLAFTHFF
TDNVAVELVGGIPPRHKIEGTGALSGYGEIGSAKQWSPAVLAKWYFFNADTKFRPYVGLGLNYTWFSDEKITNSAFQTKL
AGPGSKSNVSTDGSLNPVLNVGATYAITKDWFVGLSVSYLPLKTTATIDSTTATGVHVVSEAKIKINPVVTFLNVGYRF

Sequences:

>Translated_239_residues
MAYKKALAAAAGMILATAAHAQAAGSNIVSLGWFRVMPNSSSDPLVVKSIGGIPVNQSQSGTGAKIQEADTVGLAFTHFF
TDNVAVELVGGIPPRHKIEGTGALSGYGEIGSAKQWSPAVLAKWYFFNADTKFRPYVGLGLNYTWFSDEKITNSAFQTKL
AGPGSKSNVSTDGSLNPVLNVGATYAITKDWFVGLSVSYLPLKTTATIDSTTATGVHVVSEAKIKINPVVTFLNVGYRF
>Mature_238_residues
AYKKALAAAAGMILATAAHAQAAGSNIVSLGWFRVMPNSSSDPLVVKSIGGIPVNQSQSGTGAKIQEADTVGLAFTHFFT
DNVAVELVGGIPPRHKIEGTGALSGYGEIGSAKQWSPAVLAKWYFFNADTKFRPYVGLGLNYTWFSDEKITNSAFQTKLA
GPGSKSNVSTDGSLNPVLNVGATYAITKDWFVGLSVSYLPLKTTATIDSTTATGVHVVSEAKIKINPVVTFLNVGYRF

Specific function: Acts as a receptor for colicin S4 [H]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=233, Percent_Identity=33.9055793991416, Blast_Score=110, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 25198; Mature: 25067

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYKKALAAAAGMILATAAHAQAAGSNIVSLGWFRVMPNSSSDPLVVKSIGGIPVNQSQS
CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCC
GTGAKIQEADTVGLAFTHFFTDNVAVELVGGIPPRHKIEGTGALSGYGEIGSAKQWSPAV
CCCCEEECCCCEEEEEEEEECCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCE
LAKWYFFNADTKFRPYVGLGLNYTWFSDEKITNSAFQTKLAGPGSKSNVSTDGSLNPVLN
EEEEEEECCCCCCCCEEECCEEEEEECCCCCCCHHHHEEECCCCCCCCCCCCCCCCCEEE
VGATYAITKDWFVGLSVSYLPLKTTATIDSTTATGVHVVSEAKIKINPVVTFLNVGYRF
CCEEEEEECCEEEEEEEEEEEEEEEEEECCCCCCCEEEEEECEEEEEEEEEEEECCCCC
>Mature Secondary Structure 
AYKKALAAAAGMILATAAHAQAAGSNIVSLGWFRVMPNSSSDPLVVKSIGGIPVNQSQS
CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCC
GTGAKIQEADTVGLAFTHFFTDNVAVELVGGIPPRHKIEGTGALSGYGEIGSAKQWSPAV
CCCCEEECCCCEEEEEEEEECCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCE
LAKWYFFNADTKFRPYVGLGLNYTWFSDEKITNSAFQTKLAGPGSKSNVSTDGSLNPVLN
EEEEEEECCCCCCCCEEECCEEEEEECCCCCCCHHHHEEECCCCCCCCCCCCCCCCCEEE
VGATYAITKDWFVGLSVSYLPLKTTATIDSTTATGVHVVSEAKIKINPVVTFLNVGYRF
CCEEEEEECCEEEEEEEEEEEEEEEEEECCCCCCCEEEEEECEEEEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3058546; 9097039; 9278503; 9629924; 10348872 [H]