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The map label for this gene is 187930476

Identifier: 187930476

GI number: 187930476

Start: 3574372

End: 3575532

Strand: Reverse

Name: 187930476

Synonym: Rpic_3410

Alternate gene names: NA

Gene position: 3575532-3574372 (Counterclockwise)

Preceding gene: 187930477

Following gene: 187930473

Centisome position: 90.69

GC content: 61.24

Gene sequence:

>1161_bases
ATGAAGATCAAGCTGTTTGCGGCCGCTGCTGCCGCCCTGGTTTCGGCTGGCGCCTTCGCTCAATCGAGCGTGACGATGTA
CGGTGTGGTCGATGCCGGCGTTGAGTGGGTCAACAAGGCGCCGAATGCTGCTCGCACGGAAGGCAACTCCCGCGTCGGCA
TGCAGTCGGGCAACATGTCCGGCTCGCGTTGGGGTCTGCGCGGCGTTGAAGACCTGGGCGGTGGCCTGAAGGGCGTCTTC
AACCTGGAAAGCGGCTTCGACATCGACGACGGCCGTTCGGCGCAAGGTAACCGCCTGTTCGGTCGCGCTGCCTACGTCGG
ACTGCAGGGCCAGTGGGGCCAACTGACCTTGGGCCGCCAGCAGAACCTGCTGTACGACTTCGCGCTGCAATACGACCCGA
TGGCGATCGCCTCGCGCTATTCAATCGCTTCGCAAGATGCCTACTTGGCTGGCCGTGCTGATAACGCGGTCAAGTACGTC
GGTACCTTCGGCGGCCTGACGGCATCGGCGCTATACGCGTTCAATCGTGACGGCAACGAGCAAGCTGGCATGACGAAATT
GGGCCGTGAGTGGAGCGCCGGCCTGAACTATGCCACCGGCCCGTTCGCGGTCGGTGCGGTGTATGACCAGTCGAATGGCG
CTAGCAATGCCTTCTTCACCAACGGTTTCATGGCGGACCTGAAGGAGCAGCGTGCCACCATCGGTGGAACCTACGCTGTC
GGCCCTGCCAAGTTTTATGCAGGCTACCGCTGGTACAAGATGAGCCATGACCTGGGCTCGACCGGTGTCAATGGCGACCT
GCGTTCGAACCTGTACTGGCTTGGCGCCGGCTATCAAGCGACGCCCGCGCTGACGCTGACCGGTACCGCCTACTACCAGA
CATTCAAGAACGGCGAATTGCTGGGTGCTCTGGCGAGCAACGATGCGAATACCAACGTCGGCAATCCTTGGCTGTTCGTG
GTCGGGGCTGACTATGCCTTGTCCAAGCGCACCGATGCGTACATGAACGTGGCCTATGCCAAGAACAGCCGCAGCTCGAT
TCTGGGCGTCGCGGGCATCAATGGCACCTCGTCGAATCTTTCGACGCTGCAATCGAACCAGAACCAAGTGTTCGATGGCA
ACCAACTGGGCGCCGTGGTCGGTATCCGCCACAAGTTCTAA

Upstream 100 bases:

>100_bases
TACCACAGGCTGTTTTTGAAATTGGTGAAGATGAGAAACCGGAATACATAATGGCCGCCGATCGCAAATCCTCGCGATAG
TGTTTTTCAAGGAAGACGAT

Downstream 100 bases:

>100_bases
TCGGCATTCTGTCGGCTAGATATAAAAAACCCGGGCTTCAACCCGGGTTTTTTGTTGGCGCCTCCTTCGTGCGCGGCGAT
CTAGTGCAGCATCACGCGCC

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MKIKLFAAAAAALVSAGAFAQSSVTMYGVVDAGVEWVNKAPNAARTEGNSRVGMQSGNMSGSRWGLRGVEDLGGGLKGVF
NLESGFDIDDGRSAQGNRLFGRAAYVGLQGQWGQLTLGRQQNLLYDFALQYDPMAIASRYSIASQDAYLAGRADNAVKYV
GTFGGLTASALYAFNRDGNEQAGMTKLGREWSAGLNYATGPFAVGAVYDQSNGASNAFFTNGFMADLKEQRATIGGTYAV
GPAKFYAGYRWYKMSHDLGSTGVNGDLRSNLYWLGAGYQATPALTLTGTAYYQTFKNGELLGALASNDANTNVGNPWLFV
VGADYALSKRTDAYMNVAYAKNSRSSILGVAGINGTSSNLSTLQSNQNQVFDGNQLGAVVGIRHKF

Sequences:

>Translated_386_residues
MKIKLFAAAAAALVSAGAFAQSSVTMYGVVDAGVEWVNKAPNAARTEGNSRVGMQSGNMSGSRWGLRGVEDLGGGLKGVF
NLESGFDIDDGRSAQGNRLFGRAAYVGLQGQWGQLTLGRQQNLLYDFALQYDPMAIASRYSIASQDAYLAGRADNAVKYV
GTFGGLTASALYAFNRDGNEQAGMTKLGREWSAGLNYATGPFAVGAVYDQSNGASNAFFTNGFMADLKEQRATIGGTYAV
GPAKFYAGYRWYKMSHDLGSTGVNGDLRSNLYWLGAGYQATPALTLTGTAYYQTFKNGELLGALASNDANTNVGNPWLFV
VGADYALSKRTDAYMNVAYAKNSRSSILGVAGINGTSSNLSTLQSNQNQVFDGNQLGAVVGIRHKF
>Mature_386_residues
MKIKLFAAAAAALVSAGAFAQSSVTMYGVVDAGVEWVNKAPNAARTEGNSRVGMQSGNMSGSRWGLRGVEDLGGGLKGVF
NLESGFDIDDGRSAQGNRLFGRAAYVGLQGQWGQLTLGRQQNLLYDFALQYDPMAIASRYSIASQDAYLAGRADNAVKYV
GTFGGLTASALYAFNRDGNEQAGMTKLGREWSAGLNYATGPFAVGAVYDQSNGASNAFFTNGFMADLKEQRATIGGTYAV
GPAKFYAGYRWYKMSHDLGSTGVNGDLRSNLYWLGAGYQATPALTLTGTAYYQTFKNGELLGALASNDANTNVGNPWLFV
VGADYALSKRTDAYMNVAYAKNSRSSILGVAGINGTSSNLSTLQSNQNQVFDGNQLGAVVGIRHKF

Specific function: Forms anion selective channels [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 40883; Mature: 40883

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKLFAAAAAALVSAGAFAQSSVTMYGVVDAGVEWVNKAPNAARTEGNSRVGMQSGNMS
CEEEEHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHCCCCCHHCCCCCEEEEECCCCC
GSRWGLRGVEDLGGGLKGVFNLESGFDIDDGRSAQGNRLFGRAAYVGLQGQWGQLTLGRQ
CCCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEECCCC
QNLLYDFALQYDPMAIASRYSIASQDAYLAGRADNAVKYVGTFGGLTASALYAFNRDGNE
CCEEEEEEEECCCHHHHHHCCCCCCCEEEECCCCCCEEEEECCCCHHHHEEEEECCCCCC
QAGMTKLGREWSAGLNYATGPFAVGAVYDQSNGASNAFFTNGFMADLKEQRATIGGTYAV
CCCHHHHCCHHHCCCCCCCCCEEEEEEEECCCCCCCCEEECCHHHHHHHHHHHCCCEEEE
GPAKFYAGYRWYKMSHDLGSTGVNGDLRSNLYWLGAGYQATPALTLTGTAYYQTFKNGEL
CCHHHHCCEEEEEECCCCCCCCCCCCHHCCEEEEECCCCCCCEEEEECHHHEEECCCCCE
LGALASNDANTNVGNPWLFVVGADYALSKRTDAYMNVAYAKNSRSSILGVAGINGTSSNL
EEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCH
STLQSNQNQVFDGNQLGAVVGIRHKF
HHHHCCCCCEECCCCCCEEEEEEECC
>Mature Secondary Structure
MKIKLFAAAAAALVSAGAFAQSSVTMYGVVDAGVEWVNKAPNAARTEGNSRVGMQSGNMS
CEEEEHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHCCCCCHHCCCCCEEEEECCCCC
GSRWGLRGVEDLGGGLKGVFNLESGFDIDDGRSAQGNRLFGRAAYVGLQGQWGQLTLGRQ
CCCCCCCCHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEECCCC
QNLLYDFALQYDPMAIASRYSIASQDAYLAGRADNAVKYVGTFGGLTASALYAFNRDGNE
CCEEEEEEEECCCHHHHHHCCCCCCCEEEECCCCCCEEEEECCCCHHHHEEEEECCCCCC
QAGMTKLGREWSAGLNYATGPFAVGAVYDQSNGASNAFFTNGFMADLKEQRATIGGTYAV
CCCHHHHCCHHHCCCCCCCCCEEEEEEEECCCCCCCCEEECCHHHHHHHHHHHCCCEEEE
GPAKFYAGYRWYKMSHDLGSTGVNGDLRSNLYWLGAGYQATPALTLTGTAYYQTFKNGEL
CCHHHHCCEEEEEECCCCCCCCCCCCHHCCEEEEECCCCCCCEEEEECHHHEEECCCCCE
LGALASNDANTNVGNPWLFVVGADYALSKRTDAYMNVAYAKNSRSSILGVAGINGTSSNL
EEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCH
STLQSNQNQVFDGNQLGAVVGIRHKF
HHHHCCCCCEECCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]