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The map label for this gene is 187930433

Identifier: 187930433

GI number: 187930433

Start: 3527704

End: 3528597

Strand: Reverse

Name: 187930433

Synonym: Rpic_3367

Alternate gene names: NA

Gene position: 3528597-3527704 (Counterclockwise)

Preceding gene: 187930437

Following gene: 187930432

Centisome position: 89.5

GC content: 67.56

Gene sequence:

>894_bases
ATGAGCGACGCGCAACACGACGAACACGAGCCTCTGATCAAGACCCCCAAGCAGCTGATCATCGCGGTCATCGCCGCCTT
TGCCGTTCCCATCCTCATCATCATCCTGCTGGCCAATTACGTTGGCCTGGGCGCCCGGGAAGGCGCAGGCGGTTCCGGCA
TGTCGGAAGAGGCCGTCAACGATCGCATCAAGCCCGTTGCGCAGCTCGAACTGAAAGACCCGAACGCACCGCGCGTTTTC
AAGACCGGCGAGCAGCTCTACAAGGAAGTCTGCGCGACCTGCCACGCTGCAGGCGTGGCCGGCGCGCCGAAATTTGGCGA
TGCGGCAAGCTGGGGTCCGCGCCTGTCGCAGGGACTCGATGGCCTGACGAAGGTGGCACTGGCCGGCAAGGGTGGCATGC
CCGCACGCGGCGGCACGTCGCCCGATGATGTGAGCGACTACGAAATCGAGCGTGCCATCGTCTACATGGCCAACTCCGCC
GGTGGGAAGCTGCAGGAACCGGCCGCCCCGGCAGGCGCGGGCGCAGCACCGGCTCAGGCAGCAGCGCCGGATGCATCCGC
ACCGGCGGCAGCACAGGCTCCGGCCGCTGCTGCGCCGGCACCGGCAGCAGCACCGGTCGCGCCGGCTGCAGCCGCCGCAC
CGCAAGCCTCGGCGGGGGAAGTTGGCAAGAAGGTTTATGAGTCGACTTGCCAGATGTGCCACGCCGCCGGTGTGGCCGGT
GCGCCGAAGTTTGGCGACAAGGCCGCCTGGGCGCCGCGCCTCGCCCAAGGCAAGGCCAAGTTGTATGACTCCGCGCTGCA
CGGCAAGGGCGCGATGCCGCCCAAGGGCACCTATGCCGGCTCCGATGACGACGTGAAAGCCGCCGTCGACTACATGGCCG
CTGCTGCCAAGTAA

Upstream 100 bases:

>100_bases
CGATCCAATGCGGCCCCCACGCACTGCCGGCGATGCTCGTGACCTTGCCGGCGGCGCTCCGAGGGCTCCAAGAGCGGTTC
CACCATCCTGAGAGTTGAGC

Downstream 100 bases:

>100_bases
GCCGCCCTTGCATTCCCGAAGAAGCCCGCCCCGAGCGGGCTTTTTTTTGTTGCCTGCCGCGGCAGTGTCACGCGCGGGGC
ATGCCGTTTGCTACGCATTT

Product: cytochrome c class I

Products: NA

Alternate protein names: Cytochrome c555 [H]

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MSDAQHDEHEPLIKTPKQLIIAVIAAFAVPILIIILLANYVGLGAREGAGGSGMSEEAVNDRIKPVAQLELKDPNAPRVF
KTGEQLYKEVCATCHAAGVAGAPKFGDAASWGPRLSQGLDGLTKVALAGKGGMPARGGTSPDDVSDYEIERAIVYMANSA
GGKLQEPAAPAGAGAAPAQAAAPDASAPAAAQAPAAAAPAPAAAPVAPAAAAAPQASAGEVGKKVYESTCQMCHAAGVAG
APKFGDKAAWAPRLAQGKAKLYDSALHGKGAMPPKGTYAGSDDDVKAAVDYMAAAAK

Sequences:

>Translated_297_residues
MSDAQHDEHEPLIKTPKQLIIAVIAAFAVPILIIILLANYVGLGAREGAGGSGMSEEAVNDRIKPVAQLELKDPNAPRVF
KTGEQLYKEVCATCHAAGVAGAPKFGDAASWGPRLSQGLDGLTKVALAGKGGMPARGGTSPDDVSDYEIERAIVYMANSA
GGKLQEPAAPAGAGAAPAQAAAPDASAPAAAQAPAAAAPAPAAAPVAPAAAAAPQASAGEVGKKVYESTCQMCHAAGVAG
APKFGDKAAWAPRLAQGKAKLYDSALHGKGAMPPKGTYAGSDDDVKAAVDYMAAAAK
>Mature_296_residues
SDAQHDEHEPLIKTPKQLIIAVIAAFAVPILIIILLANYVGLGAREGAGGSGMSEEAVNDRIKPVAQLELKDPNAPRVFK
TGEQLYKEVCATCHAAGVAGAPKFGDAASWGPRLSQGLDGLTKVALAGKGGMPARGGTSPDDVSDYEIERAIVYMANSAG
GKLQEPAAPAGAGAAPAQAAAPDASAPAAAQAPAAAAPAPAAAPVAPAAAAAPQASAGEVGKKVYESTCQMCHAAGVAGA
PKFGDKAAWAPRLAQGKAKLYDSALHGKGAMPPKGTYAGSDDDVKAAVDYMAAAAK

Specific function: This basic c-type monoheme cytochrome has been found exclusively in the green photosynthetic bacteria, although its role in bacterial photosynthesis is not established. It has an unusually low redox potential compared with mitochondrial cytochrome c. It i

COG id: COG3245

COG function: function code C; Cytochrome c5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR002323 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 29551; Mature: 29419

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDAQHDEHEPLIKTPKQLIIAVIAAFAVPILIIILLANYVGLGAREGAGGSGMSEEAVN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
DRIKPVAQLELKDPNAPRVFKTGEQLYKEVCATCHAAGVAGAPKFGDAASWGPRLSQGLD
HHCCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
GLTKVALAGKGGMPARGGTSPDDVSDYEIERAIVYMANSAGGKLQEPAAPAGAGAAPAQA
HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCHH
AAPDASAPAAAQAPAAAAPAPAAAPVAPAAAAAPQASAGEVGKKVYESTCQMCHAAGVAG
CCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
APKFGDKAAWAPRLAQGKAKLYDSALHGKGAMPPKGTYAGSDDDVKAAVDYMAAAAK
CCCCCCCHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SDAQHDEHEPLIKTPKQLIIAVIAAFAVPILIIILLANYVGLGAREGAGGSGMSEEAVN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
DRIKPVAQLELKDPNAPRVFKTGEQLYKEVCATCHAAGVAGAPKFGDAASWGPRLSQGLD
HHCCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
GLTKVALAGKGGMPARGGTSPDDVSDYEIERAIVYMANSAGGKLQEPAAPAGAGAAPAQA
HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCHH
AAPDASAPAAAQAPAAAAPAPAAAPVAPAAAAAPQASAGEVGKKVYESTCQMCHAAGVAG
CCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
APKFGDKAAWAPRLAQGKAKLYDSALHGKGAMPPKGTYAGSDDDVKAAVDYMAAAAK
CCCCCCCHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]