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The map label for this gene is trbJ [H]

Identifier: 187930260

GI number: 187930260

Start: 3345327

End: 3346070

Strand: Reverse

Name: trbJ [H]

Synonym: Rpic_3193

Alternate gene names: 187930260

Gene position: 3346070-3345327 (Counterclockwise)

Preceding gene: 187930261

Following gene: 187930259

Centisome position: 84.87

GC content: 59.27

Gene sequence:

>744_bases
ATGAAACTCGAAACGCGCATCGCAGGCTTCATCCTTGCTGCCGCCATTGCCACGCCGGCCTTGGCCGGCACCGTGGCGGG
GACTGGCGGTTCGACCGAAGTCACGCAAATCCTGAACAACCTGCAGCTCATCCAAGCCTATGAGCAGCAGGTGCAGCAGT
ATGTGCTTCAGGGCAAGCAGGTCGAGGCCGAGCTACGGAACTTGATCTCCAACCCGACATCGATACTGGGTGACGATGTC
GGCAAGATGATCAACACCATTGGGTCGATCTACAACGGCGGGCAGTCCATTGGCTACAACCTCGCGCAGATCGACCAGAA
CTTTGCGCGAACGTTCAAGAGTCCAACGGCGGGCAATCTCGCCAAGATGTTCACCTCCTGGCACCAGACCAATACGGACA
CGCTTCAGTCTGCGCTCCGCGCCGTTGGGGCACAGCGCGACAACTACGCATCTAGCCAGGCTGCGCTGACCGACCTCTAC
AACCGGAGCCAGACCACCAACGGCAATCTCGATGCCCTGCAGACGCTCTCTCAGATCAACGTGCGCCAGATCCAAGAATT
GCAGTCTCTCAAAGAGATGATGGCGACCCAAACGACAGCGGCGGCGACCTACATGGCGACACAGAATGCGAAGGACCAGA
AGGGGCTGGATGACGCCACGGGGCTTATGCGGCCTTCCGGAAGGCCGATACCCTCGGTGGAGTATGCGCCTGCGCCGAAG
TGGAAGGGCTTTCTCCAAAACTGA

Upstream 100 bases:

>100_bases
TGGCCCTCAAGGGCAATCCTTGGCCCTGCGGCGCTCTCATTGTCGCGAGCTTGGTTTACCTGCCGTTTCGCCGTCGTCAA
CTGAACCAGTGAGGAATACG

Downstream 100 bases:

>100_bases
CTAGTGGATTTAGACCTATGAACAAGATCGCCGCAATTTTCATCGTCATCGCCGCCCTGGCGGGCTGTGGAGAGAAGTCT
GGTTCTGCCTCCGTTTCCGG

Product: P-type conjugative transfer protein TrbJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MKLETRIAGFILAAAIATPALAGTVAGTGGSTEVTQILNNLQLIQAYEQQVQQYVLQGKQVEAELRNLISNPTSILGDDV
GKMINTIGSIYNGGQSIGYNLAQIDQNFARTFKSPTAGNLAKMFTSWHQTNTDTLQSALRAVGAQRDNYASSQAALTDLY
NRSQTTNGNLDALQTLSQINVRQIQELQSLKEMMATQTTAAATYMATQNAKDQKGLDDATGLMRPSGRPIPSVEYAPAPK
WKGFLQN

Sequences:

>Translated_247_residues
MKLETRIAGFILAAAIATPALAGTVAGTGGSTEVTQILNNLQLIQAYEQQVQQYVLQGKQVEAELRNLISNPTSILGDDV
GKMINTIGSIYNGGQSIGYNLAQIDQNFARTFKSPTAGNLAKMFTSWHQTNTDTLQSALRAVGAQRDNYASSQAALTDLY
NRSQTTNGNLDALQTLSQINVRQIQELQSLKEMMATQTTAAATYMATQNAKDQKGLDDATGLMRPSGRPIPSVEYAPAPK
WKGFLQN
>Mature_247_residues
MKLETRIAGFILAAAIATPALAGTVAGTGGSTEVTQILNNLQLIQAYEQQVQQYVLQGKQVEAELRNLISNPTSILGDDV
GKMINTIGSIYNGGQSIGYNLAQIDQNFARTFKSPTAGNLAKMFTSWHQTNTDTLQSALRAVGAQRDNYASSQAALTDLY
NRSQTTNGNLDALQTLSQINVRQIQELQSLKEMMATQTTAAATYMATQNAKDQKGLDDATGLMRPSGRPIPSVEYAPAPK
WKGFLQN

Specific function: Unknown

COG id: COG5314

COG function: function code U; Conjugal transfer/entry exclusion protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.tumefaciens Ti plasmid trbJ [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014147 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26661; Mature: 26661

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCC
>Mature Secondary Structure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CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]