Click here to switch to the map view.

The map label for this gene is 187930255

Identifier: 187930255

GI number: 187930255

Start: 3340082

End: 3340870

Strand: Reverse

Name: 187930255

Synonym: Rpic_3188

Alternate gene names: NA

Gene position: 3340870-3340082 (Counterclockwise)

Preceding gene: 187930257

Following gene: 187930253

Centisome position: 84.74

GC content: 61.34

Gene sequence:

>789_bases
ATGGAAGCAAAGAGGAAAGTCGGATCTCTACGCGATCCGGCGGCGCGTTGGGGCAGAGACGCGTTCAACACGTACAGGGG
CTGCGTCGCCTTCGTCGTCACCGAGGACGATCACGGCACGCAGGGCATTGGCACATGTTTCCATGTCGGCGAGGGCGTGT
TCGTCACCGCCCGTCATGTCGTAGAGGGCCGGACCATCAGCGAGATAGGCTTCGACGACGACCTGACTGCGTTGAGCCTG
CTTGAAGATCCGAAGCACTGGGACCGGAAGCCGCAAGGTAGCGTCACGATCACGCGCGGCCCGCTCTTCCACTCCAACGC
CGAGATCGATCTGGCGTGCTTCGTTGCGGAGCCCTACCCGAAGCGATCGATTCCGCTTGGCGGTCACCTCGACGACTGGA
TGGGCCAGTATGAGCTCGTTTTGTACCGGACCCTCGTTCTCGGCTACCCGCCGGTGCAGTTGACAAAAAAGCCGCTGCTA
GTCGCGAGTCTCGGCGAGGTGAATGCCCTTACCGATCTCTATTGTTCCCCCCATCCGCATTTCATCGTTTCATCGACAGC
GCGCGGTGGCTTCAGCGGTGGCCCGGCGCTTGTCGCCTATGACGAGGCAAATCCCGATGGCGGCACTGCAGCGCTGGGGG
TTGTCACCCAGGCACTGTGTAAGAACGGGGAGCCCGAGCAGCTCGGCTACATGGCCGTCCTAACTATCGAGCCAGTCTAT
GGGATGCTGGAGCAGCACGGCATCCTTCCGGTAGCGCAAAAGCTCGACTTCTGCCGGGACGAATCTTGA

Upstream 100 bases:

>100_bases
GCCGACGTTCGTGTGTGGCATTGCGATCGTCCGCTGCGCTGCGGTACCGGTGGGGCAGGCACATGCTTGCGCCGCGCGAC
AAAGGAGACGCACAGACAAC

Downstream 100 bases:

>100_bases
CCCGTGTCAGCGAACAAGTCGCCTCCTAGGTCCGAGGCGCGGGTGGCCGTGGTACGTCCAAGCACGCCGCGCCGGCCCTG
CGGGGCCTTCCCGCCACCTC

Product: peptidase C24, Calicivirus polyprotein ORF 1

Products: NA

Alternate protein names: Peptidase C

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MEAKRKVGSLRDPAARWGRDAFNTYRGCVAFVVTEDDHGTQGIGTCFHVGEGVFVTARHVVEGRTISEIGFDDDLTALSL
LEDPKHWDRKPQGSVTITRGPLFHSNAEIDLACFVAEPYPKRSIPLGGHLDDWMGQYELVLYRTLVLGYPPVQLTKKPLL
VASLGEVNALTDLYCSPHPHFIVSSTARGGFSGGPALVAYDEANPDGGTAALGVVTQALCKNGEPEQLGYMAVLTIEPVY
GMLEQHGILPVAQKLDFCRDES

Sequences:

>Translated_262_residues
MEAKRKVGSLRDPAARWGRDAFNTYRGCVAFVVTEDDHGTQGIGTCFHVGEGVFVTARHVVEGRTISEIGFDDDLTALSL
LEDPKHWDRKPQGSVTITRGPLFHSNAEIDLACFVAEPYPKRSIPLGGHLDDWMGQYELVLYRTLVLGYPPVQLTKKPLL
VASLGEVNALTDLYCSPHPHFIVSSTARGGFSGGPALVAYDEANPDGGTAALGVVTQALCKNGEPEQLGYMAVLTIEPVY
GMLEQHGILPVAQKLDFCRDES
>Mature_262_residues
MEAKRKVGSLRDPAARWGRDAFNTYRGCVAFVVTEDDHGTQGIGTCFHVGEGVFVTARHVVEGRTISEIGFDDDLTALSL
LEDPKHWDRKPQGSVTITRGPLFHSNAEIDLACFVAEPYPKRSIPLGGHLDDWMGQYELVLYRTLVLGYPPVQLTKKPLL
VASLGEVNALTDLYCSPHPHFIVSSTARGGFSGGPALVAYDEANPDGGTAALGVVTQALCKNGEPEQLGYMAVLTIEPVY
GMLEQHGILPVAQKLDFCRDES

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28455; Mature: 28455

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAKRKVGSLRDPAARWGRDAFNTYRGCVAFVVTEDDHGTQGIGTCFHVGEGVFVTARHV
CCCHHHHCCCCCHHHHHCHHHHHHHCCEEEEEEECCCCCCCCCHHEEECCCCEEEEEEEH
VEGRTISEIGFDDDLTALSLLEDPKHWDRKPQGSVTITRGPLFHSNAEIDLACFVAEPYP
HCCCEEECCCCCCCHHHHHHHCCCHHHCCCCCCCEEEEECCEEECCCCEEEEEEEECCCC
KRSIPLGGHLDDWMGQYELVLYRTLVLGYPPVQLTKKPLLVASLGEVNALTDLYCSPHPH
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEECCCHHHHHHHCCCCCCC
FIVSSTARGGFSGGPALVAYDEANPDGGTAALGVVTQALCKNGEPEQLGYMAVLTIEPVY
EEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCHHCEEEEEEECHHH
GMLEQHGILPVAQKLDFCRDES
HHHHHCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MEAKRKVGSLRDPAARWGRDAFNTYRGCVAFVVTEDDHGTQGIGTCFHVGEGVFVTARHV
CCCHHHHCCCCCHHHHHCHHHHHHHCCEEEEEEECCCCCCCCCHHEEECCCCEEEEEEEH
VEGRTISEIGFDDDLTALSLLEDPKHWDRKPQGSVTITRGPLFHSNAEIDLACFVAEPYP
HCCCEEECCCCCCCHHHHHHHCCCHHHCCCCCCCEEEEECCEEECCCCEEEEEEEECCCC
KRSIPLGGHLDDWMGQYELVLYRTLVLGYPPVQLTKKPLLVASLGEVNALTDLYCSPHPH
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEECCCHHHHHHHCCCCCCC
FIVSSTARGGFSGGPALVAYDEANPDGGTAALGVVTQALCKNGEPEQLGYMAVLTIEPVY
EEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCHHCEEEEEEECHHH
GMLEQHGILPVAQKLDFCRDES
HHHHHCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA