Click here to switch to the map view.

The map label for this gene is 187930233

Identifier: 187930233

GI number: 187930233

Start: 3317675

End: 3319123

Strand: Reverse

Name: 187930233

Synonym: Rpic_3166

Alternate gene names: NA

Gene position: 3319123-3317675 (Counterclockwise)

Preceding gene: 187930239

Following gene: 187930232

Centisome position: 84.19

GC content: 62.39

Gene sequence:

>1449_bases
ATGCTGTTTGCTTCCATCGTCAAATCCGTCCGGAAGGCAGTACGCGCACTTATCTCGCTGGTGCGCGCCGCTGCTGCGGG
CTGCCGTCCGCCCATTTTTGCTGCCATGGTGCTGCTATGGGTTTCTGCCCAGGCTGCCGATGCTGCAGAGGCGCTTGCAT
CGGTGCCGGCTGCCGCGACGCCGCTCATTGCCGGAGGCGAGTTCGGCGATCGCTTTGGTTTTCACGGTCAATCCACCTGG
GTCTGGCAGGCCAAACCTGCGTTCAAGTCGCCGTATAGCGGTGACAACAGCCTGACGGCGGACCGGGCGACCAGTTACTC
CTTCAGCACCACGCTCGATCTCGGCATGCGGTTGTGGAGGGGCGCCGAGTTCCACTTCAACCCAGAAGTCGTGATGGGCA
AGGCATTCTCCGATCTGCACGGGCTGGGCGGCCCAACCAACGGGGAACTGGCCAAGGTCACGGGCACCGACCCGACGCTC
TATCGCGCTCGCGTGTTCCTGCGCCAGACCTGGGGTCTGGGCGGCGACACCGAAAAGGTCGATGCCGACTTCAACCAGTT
CGCCGACGTTGTGGACAAGCGTCGCGTGGTACTCACCGTGGGCAATTTGCCCGTGCTCGACGTGTTCGATGCGGTGGAGT
ACGCGCACGATCCGCGCACGCAGTTCCTAAACTGGTCGTTCATGACGCATCCGTCGTTCGACTATGCTGCGGATGCGCGC
GGCTACAGCTGGGGGATTGCGCTGGAGTACACCGATAGCGAGTTCGGCTGGGCCGTGCGCGCGGGCCGCTTCCTGCAGCC
GGTGGAGTCCAACGGCTTGCCGCTCGACACCCGTTTTCTCAAGCACTACGGCGACATGCTCGAACTGGAGAAGAGCTTCA
CGCTGTTCGGCCAGGAGGGCAAAGTGCGCCTACTCGGATGGCGAAACTTCGCACGCATGGGCCGCTTTGACGATGCCATT
GCGCTCGGTCAAGCCACTGCGGGCCAGCCCGATTTGAGTCTGGTTCGGCGTGAGCACGCCAAGGTCGGCGTGGGTTTGTC
CTTCGAGCAAAAGGTGGGTGAAAACTTGGGCCTCTTCACCCGATTGAACTGGTCGGATGATAAGACCGAGACCTATGCTT
TTACGGAAGCGGGGCGCAACGTGTCGTTTGGCGGCTTGCTCAAGGGCGCGTCGTGGGGGCGTCCGGACGATGTGCTGGGG
GCGGCCTTTTCGCTCAACATGCTGGGCCCGGACCATCGCGCCTATTTGGCCGCAGGCGGCAACGGCGCGTTCCTGGGCGA
TAGCGCCTTGAACTACGGCCACGAACGCATACTCGAAGTGTTTTACAGCTTTCAACCGGTCAAGGGCATCATGCTCAGCC
CCGATTTTCAGTTAATCCAGAACCCCGGCTACAACCGGGACCGCGGGCCTGCCAAGTTCTTCGGCCTGCGCGTCCACGCC
GAGTTCTAA

Upstream 100 bases:

>100_bases
GGTACGGCCATGTAGCCGCGCATTTGCGTGCGCGTCGCATTGGGAGGTCCGTGTCCGGTCGTTGCCTACGTTCGTCACAG
AAGCGAACGAGGGGGGCCTC

Downstream 100 bases:

>100_bases
CCGTAGGAGGACCCATATGGACAGTCCGAGTCGACCTTACCCGACATTTACATCGGTATCCCACTAGGCGAGTCCGCCGC
ACGGTTTTCCCCTGCTGCTG

Product: Carbohydrate-selective porin OprB

Products: NA

Alternate protein names: OmpA-Like Transmembrane Domain-Containing Protein; Carbohydrate-Selective Porin Oprb; OmpA-Like Transmembrane Domain Protein; OmpA Domain-Containing Protein; Outer Membrane Protein A-Like; Carbohydrate-Selective Porin

Number of amino acids: Translated: 482; Mature: 482

Protein sequence:

>482_residues
MLFASIVKSVRKAVRALISLVRAAAAGCRPPIFAAMVLLWVSAQAADAAEALASVPAAATPLIAGGEFGDRFGFHGQSTW
VWQAKPAFKSPYSGDNSLTADRATSYSFSTTLDLGMRLWRGAEFHFNPEVVMGKAFSDLHGLGGPTNGELAKVTGTDPTL
YRARVFLRQTWGLGGDTEKVDADFNQFADVVDKRRVVLTVGNLPVLDVFDAVEYAHDPRTQFLNWSFMTHPSFDYAADAR
GYSWGIALEYTDSEFGWAVRAGRFLQPVESNGLPLDTRFLKHYGDMLELEKSFTLFGQEGKVRLLGWRNFARMGRFDDAI
ALGQATAGQPDLSLVRREHAKVGVGLSFEQKVGENLGLFTRLNWSDDKTETYAFTEAGRNVSFGGLLKGASWGRPDDVLG
AAFSLNMLGPDHRAYLAAGGNGAFLGDSALNYGHERILEVFYSFQPVKGIMLSPDFQLIQNPGYNRDRGPAKFFGLRVHA
EF

Sequences:

>Translated_482_residues
MLFASIVKSVRKAVRALISLVRAAAAGCRPPIFAAMVLLWVSAQAADAAEALASVPAAATPLIAGGEFGDRFGFHGQSTW
VWQAKPAFKSPYSGDNSLTADRATSYSFSTTLDLGMRLWRGAEFHFNPEVVMGKAFSDLHGLGGPTNGELAKVTGTDPTL
YRARVFLRQTWGLGGDTEKVDADFNQFADVVDKRRVVLTVGNLPVLDVFDAVEYAHDPRTQFLNWSFMTHPSFDYAADAR
GYSWGIALEYTDSEFGWAVRAGRFLQPVESNGLPLDTRFLKHYGDMLELEKSFTLFGQEGKVRLLGWRNFARMGRFDDAI
ALGQATAGQPDLSLVRREHAKVGVGLSFEQKVGENLGLFTRLNWSDDKTETYAFTEAGRNVSFGGLLKGASWGRPDDVLG
AAFSLNMLGPDHRAYLAAGGNGAFLGDSALNYGHERILEVFYSFQPVKGIMLSPDFQLIQNPGYNRDRGPAKFFGLRVHA
EF
>Mature_482_residues
MLFASIVKSVRKAVRALISLVRAAAAGCRPPIFAAMVLLWVSAQAADAAEALASVPAAATPLIAGGEFGDRFGFHGQSTW
VWQAKPAFKSPYSGDNSLTADRATSYSFSTTLDLGMRLWRGAEFHFNPEVVMGKAFSDLHGLGGPTNGELAKVTGTDPTL
YRARVFLRQTWGLGGDTEKVDADFNQFADVVDKRRVVLTVGNLPVLDVFDAVEYAHDPRTQFLNWSFMTHPSFDYAADAR
GYSWGIALEYTDSEFGWAVRAGRFLQPVESNGLPLDTRFLKHYGDMLELEKSFTLFGQEGKVRLLGWRNFARMGRFDDAI
ALGQATAGQPDLSLVRREHAKVGVGLSFEQKVGENLGLFTRLNWSDDKTETYAFTEAGRNVSFGGLLKGASWGRPDDVLG
AAFSLNMLGPDHRAYLAAGGNGAFLGDSALNYGHERILEVFYSFQPVKGIMLSPDFQLIQNPGYNRDRGPAKFFGLRVHA
EF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52858; Mature: 52858

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFASIVKSVRKAVRALISLVRAAAAGCRPPIFAAMVLLWVSAQAADAAEALASVPAAAT
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
PLIAGGEFGDRFGFHGQSTWVWQAKPAFKSPYSGDNSLTADRATSYSFSTTLDLGMRLWR
CEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
GAEFHFNPEVVMGKAFSDLHGLGGPTNGELAKVTGTDPTLYRARVFLRQTWGLGGDTEKV
CCCEECCCCEEECCHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCC
DADFNQFADVVDKRRVVLTVGNLPVLDVFDAVEYAHDPRTQFLNWSFMTHPSFDYAADAR
CCCHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCHHEEEEEEEECCCCCCCCCCC
GYSWGIALEYTDSEFGWAVRAGRFLQPVESNGLPLDTRFLKHYGDMLELEKSFTLFGQEG
CCEEEEEEEEECCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCC
KVRLLGWRNFARMGRFDDAIALGQATAGQPDLSLVRREHAKVGVGLSFEQKVGENLGLFT
CEEEEECHHHHHCCCCCCHHEECCCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCEEE
RLNWSDDKTETYAFTEAGRNVSFGGLLKGASWGRPDDVLGAAFSLNMLGPDHRAYLAAGG
EECCCCCCCCEEEEECCCCCCCCCCEECCCCCCCCHHHHHHEEEEECCCCCCCEEEEECC
NGAFLGDSALNYGHERILEVFYSFQPVKGIMLSPDFQLIQNPGYNRDRGPAKFFGLRVHA
CCCEECCHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHCCCCCCCCCCCCEEEEEEEEE
EF
CC
>Mature Secondary Structure
MLFASIVKSVRKAVRALISLVRAAAAGCRPPIFAAMVLLWVSAQAADAAEALASVPAAAT
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
PLIAGGEFGDRFGFHGQSTWVWQAKPAFKSPYSGDNSLTADRATSYSFSTTLDLGMRLWR
CEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
GAEFHFNPEVVMGKAFSDLHGLGGPTNGELAKVTGTDPTLYRARVFLRQTWGLGGDTEKV
CCCEECCCCEEECCHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCC
DADFNQFADVVDKRRVVLTVGNLPVLDVFDAVEYAHDPRTQFLNWSFMTHPSFDYAADAR
CCCHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCHHEEEEEEEECCCCCCCCCCC
GYSWGIALEYTDSEFGWAVRAGRFLQPVESNGLPLDTRFLKHYGDMLELEKSFTLFGQEG
CCEEEEEEEEECCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCC
KVRLLGWRNFARMGRFDDAIALGQATAGQPDLSLVRREHAKVGVGLSFEQKVGENLGLFT
CEEEEECHHHHHCCCCCCHHEECCCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCEEE
RLNWSDDKTETYAFTEAGRNVSFGGLLKGASWGRPDDVLGAAFSLNMLGPDHRAYLAAGG
EECCCCCCCCEEEEECCCCCCCCCCEECCCCCCCCHHHHHHEEEEECCCCCCCEEEEECC
NGAFLGDSALNYGHERILEVFYSFQPVKGIMLSPDFQLIQNPGYNRDRGPAKFFGLRVHA
CCCEECCHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHCCCCCCCCCCCCEEEEEEEEE
EF
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA