| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
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The map label for this gene is cyoB [H]
Identifier: 187930229
GI number: 187930229
Start: 3311958
End: 3313934
Strand: Reverse
Name: cyoB [H]
Synonym: Rpic_3162
Alternate gene names: 187930229
Gene position: 3313934-3311958 (Counterclockwise)
Preceding gene: 187930230
Following gene: 187930228
Centisome position: 84.06
GC content: 61.91
Gene sequence:
>1977_bases ATGTTTGGCAAGTTGAGTCTGGAGGCCATTCCGCTGCACGAGCCCATCGTGGTCGTGACGGTGTCGGCCATTCTGCTGGG TGGCGCGGGCCTGTTCGGCCTGATCACCTATCTCAAGAAGTGGACCTATCTCTGGAATGAGTGGATCACCTCGGTCGACC ACAAGAAGATCGGCGTGATGTACTGCATTCTGGCCATCGTGATGCTGCTGCGCGGCTTTGCCGACGCCATCATGATGCGC TCGCAACTGGCGGTTGCCTCGGGCGGCGGTGCCGGCTATCTGCCGCCTGAGCACTACGACCAGATCTTTACCGCGCACGG CGTGATCATGATTTTCTTCATGGCCATGCCGCTCATGACGGGCCTGATCAACCTGATCGTGCCGCTGCAGATCGGCGCGC GCGACGTGGCATTTCCGTTCCTGAACACGCTGTCGTTCTGGCTGGCTGCTGCAGGTGTGGTGCTGATCAACGTGTCGCTG GGCGTGGGCGAATTCGCTCGCACCGGCTGGCTGGCGTACCCGCCGCTGTCGGAGCTGGCCTACAGCCCGGGCGTGGGGGT CGATTACTACATCTGGGCCTTGCAGATATCGGGCCTCGGGACATTGCTGACCGGCGTGAACTTCGTCGCGACCATCTTCA AGATGCGCGCGCCGGGCATGACGCTGATGCGCATGCCGATCTTCACCTGGACCGCCCTGTGCGCCAACATCCTGATCGTG GCTGCCTTCCCGGTGCTGACCGTGGCGCTGGCACTGCTGGGTGCCGACCGCTACCTGGACATGCACTTCTTCACGAACGG CGGCGGTAACGCCATGCTGTACGTGAACCTGATCTGGATCTGGGGCCACCCCGAGGTGTACATCCTGATCCTGCCGGCCT TCGGCATGTTCTCGGAAATCGTCTCGACGTTCTCGCGCAAGAAGCTCTTCGGCTACACGTCGATGGTGTGGGCGACCGCC GGTATCACCGTGCTGTCGTTCCTGGTGTGGCTGCACCACTTCTTCACCATGGGCTCGGGTGCGAACGTCAACGCGTTTTT CGGTATCGCGACGATGATCATCTCGATCCCGACGGGCGTGAAGATCTTCAACTGGCTGTTCACGATGTACCGCGGCCGCG TCGAGCTGAACTCAATGATGCTGTGGACGATCGGCTTCATGATCACCTTCGTGATCGGCGGGATGACCGGCGTGCTGCTG GCTGTGCCGGGCGCCGACTTCCTGCTGCACAACAGCCTGTTCCTGATCGCTCACTTCCACAACACCATCATCGGCGGCGT GGTGTTCGGTTACCTGGCTGGTATCACGTACTGGTTCCCGAAGGCCTTCGGCTTCAAGCTGGACGAGAAGTGGGGCAAGC GCGCCTTCTGGTGCTGGTTCGTGGGCTTCTACACCGCCTTCATGCCGCTGTACGTGCTCGGCTTCATGGGCATGACGCGT CGTCTGAACCATACCGACAACCCGGCATGGCAGCCGTGGCTGATCGTTGCCGTGATCGGCGCCGCGATCATCGCCTGCGG CATCGCTTCGCAGCTCATCCAGATCTTCGTGAGCGTCCGCAACCGTCATGCGCTGGCCGACCTGACGGGCGATCCGTGGG GCGGTCGCACGCTGGAGTGGGCGACGTCGTCGCCGCCGGCGCACTACAACTTCGCCCGCGTGCCGGTCATCCGTGACATC GACGCCTTTGCCGACATGAAGGCGCGCGGCGAGGTGCTGACGCAGGTCGCACCGAGCTACGAAAAGATCCACATGCCGAA GAACACCGGCGCCGGCTTCTTCATCGGCATGTTCTCGATCGTGATGGGCTTCGCGCTGATCTGGCACATCTGGTGGATGG CCGTGCTGGGTCTGGTCGGCATGATCGGCAGCTTCATCCTCCGCAGCAACAACGACGACATCGATTACTACGTGCCCGCT CACGAGGTTCACGAGACCGAGTCGGCCTACTTCCAACGTATCGGTTCGCAGGCTTAA
Upstream 100 bases:
>100_bases CTGCACGACGGCCACGGCTGAGGCGGCAACGCGTCCGCTGCCGGTGCAGTCCGCCCTGCCTGCGCCCAAGAGCGCGGCCA AGAATTCCTAGGAGTTGACG
Downstream 100 bases:
>100_bases ACCATGGCTTCCAATGTTCTAGACGGTCACGCCGCGCACGGCCACGACCACGCGCATGACCATGCGCACCACCACGATGC TGCAGACACCAAGGTCTTCG
Product: cytochrome o ubiquinol oxidase subunit I
Products: NA
Alternate protein names: Cytochrome o subunit 1; Cytochrome o ubiquinol oxidase subunit 1; Oxidase BO(3) subunit 1; Ubiquinol oxidase polypeptide I [H]
Number of amino acids: Translated: 658; Mature: 658
Protein sequence:
>658_residues MFGKLSLEAIPLHEPIVVVTVSAILLGGAGLFGLITYLKKWTYLWNEWITSVDHKKIGVMYCILAIVMLLRGFADAIMMR SQLAVASGGGAGYLPPEHYDQIFTAHGVIMIFFMAMPLMTGLINLIVPLQIGARDVAFPFLNTLSFWLAAAGVVLINVSL GVGEFARTGWLAYPPLSELAYSPGVGVDYYIWALQISGLGTLLTGVNFVATIFKMRAPGMTLMRMPIFTWTALCANILIV AAFPVLTVALALLGADRYLDMHFFTNGGGNAMLYVNLIWIWGHPEVYILILPAFGMFSEIVSTFSRKKLFGYTSMVWATA GITVLSFLVWLHHFFTMGSGANVNAFFGIATMIISIPTGVKIFNWLFTMYRGRVELNSMMLWTIGFMITFVIGGMTGVLL AVPGADFLLHNSLFLIAHFHNTIIGGVVFGYLAGITYWFPKAFGFKLDEKWGKRAFWCWFVGFYTAFMPLYVLGFMGMTR RLNHTDNPAWQPWLIVAVIGAAIIACGIASQLIQIFVSVRNRHALADLTGDPWGGRTLEWATSSPPAHYNFARVPVIRDI DAFADMKARGEVLTQVAPSYEKIHMPKNTGAGFFIGMFSIVMGFALIWHIWWMAVLGLVGMIGSFILRSNNDDIDYYVPA HEVHETESAYFQRIGSQA
Sequences:
>Translated_658_residues MFGKLSLEAIPLHEPIVVVTVSAILLGGAGLFGLITYLKKWTYLWNEWITSVDHKKIGVMYCILAIVMLLRGFADAIMMR SQLAVASGGGAGYLPPEHYDQIFTAHGVIMIFFMAMPLMTGLINLIVPLQIGARDVAFPFLNTLSFWLAAAGVVLINVSL GVGEFARTGWLAYPPLSELAYSPGVGVDYYIWALQISGLGTLLTGVNFVATIFKMRAPGMTLMRMPIFTWTALCANILIV AAFPVLTVALALLGADRYLDMHFFTNGGGNAMLYVNLIWIWGHPEVYILILPAFGMFSEIVSTFSRKKLFGYTSMVWATA GITVLSFLVWLHHFFTMGSGANVNAFFGIATMIISIPTGVKIFNWLFTMYRGRVELNSMMLWTIGFMITFVIGGMTGVLL AVPGADFLLHNSLFLIAHFHNTIIGGVVFGYLAGITYWFPKAFGFKLDEKWGKRAFWCWFVGFYTAFMPLYVLGFMGMTR RLNHTDNPAWQPWLIVAVIGAAIIACGIASQLIQIFVSVRNRHALADLTGDPWGGRTLEWATSSPPAHYNFARVPVIRDI DAFADMKARGEVLTQVAPSYEKIHMPKNTGAGFFIGMFSIVMGFALIWHIWWMAVLGLVGMIGSFILRSNNDDIDYYVPA HEVHETESAYFQRIGSQA >Mature_658_residues MFGKLSLEAIPLHEPIVVVTVSAILLGGAGLFGLITYLKKWTYLWNEWITSVDHKKIGVMYCILAIVMLLRGFADAIMMR SQLAVASGGGAGYLPPEHYDQIFTAHGVIMIFFMAMPLMTGLINLIVPLQIGARDVAFPFLNTLSFWLAAAGVVLINVSL GVGEFARTGWLAYPPLSELAYSPGVGVDYYIWALQISGLGTLLTGVNFVATIFKMRAPGMTLMRMPIFTWTALCANILIV AAFPVLTVALALLGADRYLDMHFFTNGGGNAMLYVNLIWIWGHPEVYILILPAFGMFSEIVSTFSRKKLFGYTSMVWATA GITVLSFLVWLHHFFTMGSGANVNAFFGIATMIISIPTGVKIFNWLFTMYRGRVELNSMMLWTIGFMITFVIGGMTGVLL AVPGADFLLHNSLFLIAHFHNTIIGGVVFGYLAGITYWFPKAFGFKLDEKWGKRAFWCWFVGFYTAFMPLYVLGFMGMTR RLNHTDNPAWQPWLIVAVIGAAIIACGIASQLIQIFVSVRNRHALADLTGDPWGGRTLEWATSSPPAHYNFARVPVIRDI DAFADMKARGEVLTQVAPSYEKIHMPKNTGAGFFIGMFSIVMGFALIWHIWWMAVLGLVGMIGSFILRSNNDDIDYYVPA HEVHETESAYFQRIGSQA
Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration. This ubiquinol oxidase shows proton pump activity across the membrane in addition to the electron transfer [H]
COG id: COG0843
COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 1
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the heme-copper respiratory oxidase family [H]
Homologues:
Organism=Homo sapiens, GI251831109, Length=513, Percent_Identity=38.9863547758285, Blast_Score=341, Evalue=1e-93, Organism=Escherichia coli, GI1786634, Length=655, Percent_Identity=70.381679389313, Blast_Score=969, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6226519, Length=538, Percent_Identity=37.7323420074349, Blast_Score=338, Evalue=2e-93, Organism=Saccharomyces cerevisiae, GI6226524, Length=325, Percent_Identity=42.7692307692308, Blast_Score=248, Evalue=2e-66, Organism=Saccharomyces cerevisiae, GI6226523, Length=248, Percent_Identity=35.4838709677419, Blast_Score=134, Evalue=6e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000883 - InterPro: IPR014207 [H]
Pfam domain/function: PF00115 COX1 [H]
EC number: 1.10.3.-
Molecular weight: Translated: 72954; Mature: 72954
Theoretical pI: Translated: 8.52; Mature: 8.52
Prosite motif: PS50855 COX1 ; PS00077 COX1_CUB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFGKLSLEAIPLHEPIVVVTVSAILLGGAGLFGLITYLKKWTYLWNEWITSVDHKKIGVM CCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH YCILAIVMLLRGFADAIMMRSQLAVASGGGAGYLPPEHYDQIFTAHGVIMIFFMAMPLMT HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH GLINLIVPLQIGARDVAFPFLNTLSFWLAAAGVVLINVSLGVGEFARTGWLAYPPLSELA HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHCCCCCCCCHHHHC YSPGVGVDYYIWALQISGLGTLLTGVNFVATIFKMRAPGMTLMRMPIFTWTALCANILIV CCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH AAFPVLTVALALLGADRYLDMHFFTNGGGNAMLYVNLIWIWGHPEVYILILPAFGMFSEI HHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCEEEEEECCHHHHHHH VSTFSRKKLFGYTSMVWATAGITVLSFLVWLHHFFTMGSGANVNAFFGIATMIISIPTGV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCH KIFNWLFTMYRGRVELNSMMLWTIGFMITFVIGGMTGVLLAVPGADFLLHNSLFLIAHFH HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHCCEEEEEHHH NTIIGGVVFGYLAGITYWFPKAFGFKLDEKWGKRAFWCWFVGFYTAFMPLYVLGFMGMTR HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RLNHTDNPAWQPWLIVAVIGAAIIACGIASQLIQIFVSVRNRHALADLTGDPWGGRTLEW HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEE ATSSPPAHYNFARVPVIRDIDAFADMKARGEVLTQVAPSYEKIHMPKNTGAGFFIGMFSI CCCCCCCCCCCEECCHHHCHHHHHHHHHHHHHHHHHCCCHHHEECCCCCCCHHHHHHHHH VMGFALIWHIWWMAVLGLVGMIGSFILRSNNDDIDYYVPAHEVHETESAYFQRIGSQA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MFGKLSLEAIPLHEPIVVVTVSAILLGGAGLFGLITYLKKWTYLWNEWITSVDHKKIGVM CCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH YCILAIVMLLRGFADAIMMRSQLAVASGGGAGYLPPEHYDQIFTAHGVIMIFFMAMPLMT HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH GLINLIVPLQIGARDVAFPFLNTLSFWLAAAGVVLINVSLGVGEFARTGWLAYPPLSELA HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHCCCCCCCCHHHHC YSPGVGVDYYIWALQISGLGTLLTGVNFVATIFKMRAPGMTLMRMPIFTWTALCANILIV CCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH AAFPVLTVALALLGADRYLDMHFFTNGGGNAMLYVNLIWIWGHPEVYILILPAFGMFSEI HHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCEEEEEECCHHHHHHH VSTFSRKKLFGYTSMVWATAGITVLSFLVWLHHFFTMGSGANVNAFFGIATMIISIPTGV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCH KIFNWLFTMYRGRVELNSMMLWTIGFMITFVIGGMTGVLLAVPGADFLLHNSLFLIAHFH HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHCCEEEEEHHH NTIIGGVVFGYLAGITYWFPKAFGFKLDEKWGKRAFWCWFVGFYTAFMPLYVLGFMGMTR HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RLNHTDNPAWQPWLIVAVIGAAIIACGIASQLIQIFVSVRNRHALADLTGDPWGGRTLEW HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEE ATSSPPAHYNFARVPVIRDIDAFADMKARGEVLTQVAPSYEKIHMPKNTGAGFFIGMFSI CCCCCCCCCCCEECCHHHCHHHHHHHHHHHHHHHHHCCCHHHEECCCCCCCHHHHHHHHH VMGFALIWHIWWMAVLGLVGMIGSFILRSNNDDIDYYVPAHEVHETESAYFQRIGSQA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: Protoheme IX (Heme B55 and B562); Copper B. [C]
Metal ions: Fe; Cu [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Oxidoreductases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]