Click here to switch to the map view.

The map label for this gene is yebA [C]

Identifier: 187930148

GI number: 187930148

Start: 3215939

End: 3216904

Strand: Reverse

Name: yebA [C]

Synonym: Rpic_3080

Alternate gene names: 187930148

Gene position: 3216904-3215939 (Counterclockwise)

Preceding gene: 187930150

Following gene: 187930147

Centisome position: 81.59

GC content: 67.08

Gene sequence:

>966_bases
ATGCAGATCATCCTGATTCACCCGCGCAAGGCCGGCGCGATGCACCTGTCGCGACGCGGCGTCTTCGTGGCTATTGGCGC
GGCGCTGCTGACCGTGGCGGCCCTGTCCGTCGGTGGGACGTGGCTGGCGGCCAAGCAGGGGCTGCTGCCAGGGGCGGCAG
CTTCCGCGGTTGCCAGCGCAGACCAGCGTGTCACCCGCGAAAACCTCAACCTGATGGCCGCGCGCATCGGCGAAATGCAG
GCGCAGATCGCGCGCCTGGACGCGCTGGGGGCCCGCGTGTCGGGCCTGGCCGGTGTGCTGCCGCGCGAGTTCGATTTCAA
ATCGCAGCCGAGCCGGGGCGGGCCGGAAGGCGCGTTCTCCCGGCCGATGTCGATGCCGGAAATCCAATCCGAGTTGAATC
GCCTGACGCGCTCGGCTGACCAGCGCAACGATTACCTCAGCGTGCTGGAGAGCACCCTGATGGACCGCCAAATCCACGCG
AAGATGATGCCCACCGTGCGCCCAGTGGCGACGGGCTACGATTCGTCGGGTTTTGGCACGCGGATCGATCCGTTCACGGG
CCGCCGCACGCAGCATGACGGCGTCGATTTCGTTGGCCCTGTTGGGACGCCCATCGTCGCGGCTGCTGGCGGCGTGGTGG
TGGCCAGCGAATTCCACCACGAATACGGCAACATGATCGACATCGACCACGGCAACGGCCTGAAGACGCGCTATGCCCAT
GCGTCGAAGGTGTTCGTGAAGGTCGGTGACATCGTGAAGGCGGGCGAGCGCATCGCGCTGATCGGCCGCACTGGCCGTGC
CACCGGCCCCCATCTGCATTTCGAGGTGCACGTCAACGACGTCCCGCAGAATCCGGTGGCCTTCCTGGAGAACGCCGGCC
AGCCCAAGATGGCAGCCAACAAGGCGCCAGCGCCGAAGGTTGCGGCGGCCGATATCGGCAAGAGCATGGCGGCTGCCGGC
CATTGA

Upstream 100 bases:

>100_bases
TCTTGAGAGCGGGATGAACAAAGATTCGCATGCCGGCATTGTAGGGCGCTTCATCGCCCTTTCGTGCCGGTGGGCAGCTT
TTTTGTCCGGAAAACGAGCG

Downstream 100 bases:

>100_bases
TCCGGGCCGGGTTGCAATCGGGGTCGCCCATCCCCAATTCAGCGTGAGTGTGTGGCCGCTCGGACGGCGTTCGATGCAGC
TCTAAAGTGCAGCGTTCCCG

Product: peptidase M23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MQIILIHPRKAGAMHLSRRGVFVAIGAALLTVAALSVGGTWLAAKQGLLPGAAASAVASADQRVTRENLNLMAARIGEMQ
AQIARLDALGARVSGLAGVLPREFDFKSQPSRGGPEGAFSRPMSMPEIQSELNRLTRSADQRNDYLSVLESTLMDRQIHA
KMMPTVRPVATGYDSSGFGTRIDPFTGRRTQHDGVDFVGPVGTPIVAAAGGVVVASEFHHEYGNMIDIDHGNGLKTRYAH
ASKVFVKVGDIVKAGERIALIGRTGRATGPHLHFEVHVNDVPQNPVAFLENAGQPKMAANKAPAPKVAAADIGKSMAAAG
H

Sequences:

>Translated_321_residues
MQIILIHPRKAGAMHLSRRGVFVAIGAALLTVAALSVGGTWLAAKQGLLPGAAASAVASADQRVTRENLNLMAARIGEMQ
AQIARLDALGARVSGLAGVLPREFDFKSQPSRGGPEGAFSRPMSMPEIQSELNRLTRSADQRNDYLSVLESTLMDRQIHA
KMMPTVRPVATGYDSSGFGTRIDPFTGRRTQHDGVDFVGPVGTPIVAAAGGVVVASEFHHEYGNMIDIDHGNGLKTRYAH
ASKVFVKVGDIVKAGERIALIGRTGRATGPHLHFEVHVNDVPQNPVAFLENAGQPKMAANKAPAPKVAAADIGKSMAAAG
H
>Mature_321_residues
MQIILIHPRKAGAMHLSRRGVFVAIGAALLTVAALSVGGTWLAAKQGLLPGAAASAVASADQRVTRENLNLMAARIGEMQ
AQIARLDALGARVSGLAGVLPREFDFKSQPSRGGPEGAFSRPMSMPEIQSELNRLTRSADQRNDYLSVLESTLMDRQIHA
KMMPTVRPVATGYDSSGFGTRIDPFTGRRTQHDGVDFVGPVGTPIVAAAGGVVVASEFHHEYGNMIDIDHGNGLKTRYAH
ASKVFVKVGDIVKAGERIALIGRTGRATGPHLHFEVHVNDVPQNPVAFLENAGQPKMAANKAPAPKVAAADIGKSMAAAG
H

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=114, Percent_Identity=47.3684210526316, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI87082174, Length=121, Percent_Identity=37.1900826446281, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789099, Length=112, Percent_Identity=35.7142857142857, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 33882; Mature: 33882

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIILIHPRKAGAMHLSRRGVFVAIGAALLTVAALSVGGTWLAAKQGLLPGAAASAVASA
CEEEEECCCCCCCHHHHCCCEEEHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHH
DQRVTRENLNLMAARIGEMQAQIARLDALGARVSGLAGVLPREFDFKSQPSRGGPEGAFS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
RPMSMPEIQSELNRLTRSADQRNDYLSVLESTLMDRQIHAKMMPTVRPVATGYDSSGFGT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCC
RIDPFTGRRTQHDGVDFVGPVGTPIVAAAGGVVVASEFHHEYGNMIDIDHGNGLKTRYAH
CCCCCCCCCCCCCCCCEECCCCCCHHHHCCCEEEEHHHHHHHCCEEEEECCCCCCHHHHH
ASKVFVKVGDIVKAGERIALIGRTGRATGPHLHFEVHVNDVPQNPVAFLENAGQPKMAAN
HHHHEEEHHHHHHCCCEEEEEECCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCC
KAPAPKVAAADIGKSMAAAGH
CCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQIILIHPRKAGAMHLSRRGVFVAIGAALLTVAALSVGGTWLAAKQGLLPGAAASAVASA
CEEEEECCCCCCCHHHHCCCEEEHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHH
DQRVTRENLNLMAARIGEMQAQIARLDALGARVSGLAGVLPREFDFKSQPSRGGPEGAFS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
RPMSMPEIQSELNRLTRSADQRNDYLSVLESTLMDRQIHAKMMPTVRPVATGYDSSGFGT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCC
RIDPFTGRRTQHDGVDFVGPVGTPIVAAAGGVVVASEFHHEYGNMIDIDHGNGLKTRYAH
CCCCCCCCCCCCCCCCEECCCCCCHHHHCCCEEEEHHHHHHHCCEEEEECCCCCCHHHHH
ASKVFVKVGDIVKAGERIALIGRTGRATGPHLHFEVHVNDVPQNPVAFLENAGQPKMAAN
HHHHEEEHHHHHHCCCEEEEEECCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCC
KAPAPKVAAADIGKSMAAAGH
CCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12089438 [H]