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The map label for this gene is ypjD [C]

Identifier: 187930123

GI number: 187930123

Start: 3189566

End: 3190474

Strand: Reverse

Name: ypjD [C]

Synonym: Rpic_3055

Alternate gene names: 187930123

Gene position: 3190474-3189566 (Counterclockwise)

Preceding gene: 187930126

Following gene: 187930122

Centisome position: 80.92

GC content: 64.91

Gene sequence:

>909_bases
ATGGCAATTGTACTGTATGCGCTGACGGCGCTTCTCTACGGCATCCTCGCTTCGGTAGCGTGGGCGCGACGCGGTGGACT
GGGTGCCCGGGCGCCGGCGGGAGCCATGGCGGCAGGCGGTCAGTCGCCGGGTGCCACGGTGCTCGTTCCGCCGCCTCCGG
GGGCTGCTGACACTGTCCCGGGCTGGTGGCGCTGGGGTCTGCTGGCCGCCTTGATCGCGCACGGGTTCCTGCTGCACGAG
ACGATCTTCCCGGCCAGCGCCATGATATTTGGCTTTGCCTATGCGCTGTCGGCCATGCTGTGGCTGGGCGTGGGCATTTT
CTGGATCGAAAGCCTCTTCTTCTCGCTGGCCGGCCTCGGCTTGCTCGTGATGCCAGTGGCGCTGGTCGGAAGTCTGCTGC
CATTGGCCTTTCCGGGCACGCAAATTCTCGGCTATGCGGCCAGCCCCCTGTTCAAGCTGCACTTCGCTATTGCCAACGTC
GCCTACGGGCTGTTCACGCTAGCGGCATTCCACGCGATCCTCATGCTGGCTGCAGAGCGCCGCCTGCACACCATCAACCG
CCCGGAGGCAAGCGGGTTCGGCCGTTGGCTGGATCTGCTGCCGCCGCTGCTCACGCTCGAAAAACTGCTGTTCCGGCTGA
TCGGGGCGGGCTTCGTTCTGCTGACGCTGACGATCGCCTCGGGCGTGCTGTTCTCCGAGCAGCTGTTTCACAGCGCTTTC
CATTTCGATCACAAGAATATCTTTGCCGTGCTGTCGTGGGTGATGTTCGGCGGCATTCTGATCGGTCGGCGTTTTCGCGG
CTGGCGCGGACGCGTGGCGCTGCGCTGGGTGATGGCGGCCTTCGCGATCCTGATGCTGGCGTACGTGGGCAGCCGCTTCG
TGCTCGAAGTCATCCTGCATCGCGCCTAG

Upstream 100 bases:

>100_bases
AATGTGTTCAATGCGCGCATGTTGCGTTGCCGCCCAACGAGGCTTTCGGCGGGGGGCGGGCCCCAGCCAAAACTGGGGTG
CGCTGCGGTAAACTGTGCAA

Downstream 100 bases:

>100_bases
TGCGTTCCTGGCGCCTGCGCCGTTACTTGTCCTTGTCAGTTCCCCATGTCCCGTCCCGTCCTGCTGATCCTGATGCTGCT
CGCCGGCTGGTGGTGGTTGA

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: ORF5 [H]

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MAIVLYALTALLYGILASVAWARRGGLGARAPAGAMAAGGQSPGATVLVPPPPGAADTVPGWWRWGLLAALIAHGFLLHE
TIFPASAMIFGFAYALSAMLWLGVGIFWIESLFFSLAGLGLLVMPVALVGSLLPLAFPGTQILGYAASPLFKLHFAIANV
AYGLFTLAAFHAILMLAAERRLHTINRPEASGFGRWLDLLPPLLTLEKLLFRLIGAGFVLLTLTIASGVLFSEQLFHSAF
HFDHKNIFAVLSWVMFGGILIGRRFRGWRGRVALRWVMAAFAILMLAYVGSRFVLEVILHRA

Sequences:

>Translated_302_residues
MAIVLYALTALLYGILASVAWARRGGLGARAPAGAMAAGGQSPGATVLVPPPPGAADTVPGWWRWGLLAALIAHGFLLHE
TIFPASAMIFGFAYALSAMLWLGVGIFWIESLFFSLAGLGLLVMPVALVGSLLPLAFPGTQILGYAASPLFKLHFAIANV
AYGLFTLAAFHAILMLAAERRLHTINRPEASGFGRWLDLLPPLLTLEKLLFRLIGAGFVLLTLTIASGVLFSEQLFHSAF
HFDHKNIFAVLSWVMFGGILIGRRFRGWRGRVALRWVMAAFAILMLAYVGSRFVLEVILHRA
>Mature_301_residues
AIVLYALTALLYGILASVAWARRGGLGARAPAGAMAAGGQSPGATVLVPPPPGAADTVPGWWRWGLLAALIAHGFLLHET
IFPASAMIFGFAYALSAMLWLGVGIFWIESLFFSLAGLGLLVMPVALVGSLLPLAFPGTQILGYAASPLFKLHFAIANVA
YGLFTLAAFHAILMLAAERRLHTINRPEASGFGRWLDLLPPLLTLEKLLFRLIGAGFVLLTLTIASGVLFSEQLFHSAFH
FDHKNIFAVLSWVMFGGILIGRRFRGWRGRVALRWVMAAFAILMLAYVGSRFVLEVILHRA

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=258, Percent_Identity=26.7441860465116, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 32593; Mature: 32462

Theoretical pI: Translated: 11.32; Mature: 11.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIVLYALTALLYGILASVAWARRGGLGARAPAGAMAAGGQSPGATVLVPPPPGAADTVP
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCEEEECCCCCCCCCCC
GWWRWGLLAALIAHGFLLHETIFPASAMIFGFAYALSAMLWLGVGIFWIESLFFSLAGLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLVMPVALVGSLLPLAFPGTQILGYAASPLFKLHFAIANVAYGLFTLAAFHAILMLAAER
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLHTINRPEASGFGRWLDLLPPLLTLEKLLFRLIGAGFVLLTLTIASGVLFSEQLFHSAF
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HFDHKNIFAVLSWVMFGGILIGRRFRGWRGRVALRWVMAAFAILMLAYVGSRFVLEVILH
HCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RA
CC
>Mature Secondary Structure 
AIVLYALTALLYGILASVAWARRGGLGARAPAGAMAAGGQSPGATVLVPPPPGAADTVP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCEEEECCCCCCCCCCC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CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7553451 [H]