Click here to switch to the map view.

The map label for this gene is ubiC [H]

Identifier: 187930092

GI number: 187930092

Start: 3152952

End: 3153530

Strand: Reverse

Name: ubiC [H]

Synonym: Rpic_3024

Alternate gene names: 187930092

Gene position: 3153530-3152952 (Counterclockwise)

Preceding gene: 187930093

Following gene: 187930091

Centisome position: 79.99

GC content: 68.39

Gene sequence:

>579_bases
ATGACCGATTTCCCGTCGTACCCGCGGGGCCTCTGGCGCAGCGCGTTGCCTCCGGCAGTGGTCTATGACCGGCACTGGGC
GCGCTGGGCCGTAGGCGCCGATTCGCTGACGGCCAGGCTTCGTGCGGCATCGTCGCGCTTTCGCGTGCAATTGCTCGGCC
AGCGGCGCGCGATGCCGTTGCGTGACGAGTGGCGTTGTCTTGGCATGTCGGGCCCTGCTGAGACGCTGGTCCGCGAAGTC
CTGCTGATCTGCGACGAGATCCCGGTGGTCTATGCACACACGATCGTGCATCCGCGCAGTGTGGCGCTCGACTGGCCGTT
CCTGAAAGCGCTGGGGACGCAGCCGCTGGGCCACTCGCTGTTTGCCGATCCGCGTGTCGAGCGCGGTGGTTTCGAATTCG
CCTTGCTGGACGCGCGCCACCCGCTGGTGCGCCGCGCGCATGACGCGCTAGGCGATGCGCCTGTTGTCGGCACCGCCCGG
CTGCCAGCCCGCCGGTCGGTCTTCCGGCGCGGAGCGAGCGCGATGCTGGTAACGGAGGTTTTCCTACCTGCGCTGGCTCG
CTTCCAACCTCCGCGGTAA

Upstream 100 bases:

>100_bases
GCGACCACGGCATCAGCGACTTCGCGCAGTATATGGACGAAGTGCTCGTGTTCTGCGGCGTTCCAGCCGATCTGTTGGCG
GCCCACCCTTTCTGTGCCGC

Downstream 100 bases:

>100_bases
GCGTATTTCGCGGGCCGGGCGTCGAGCCAGTGCGGTATCATCGCCCCCAACTTTTTATCGCCGCGCGTAACGTTGTCACG
TAAGGGCGCGCGGTCATTCC

Product: Chorismate lyase

Products: NA

Alternate protein names: CL; CPL [H]

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MTDFPSYPRGLWRSALPPAVVYDRHWARWAVGADSLTARLRAASSRFRVQLLGQRRAMPLRDEWRCLGMSGPAETLVREV
LLICDEIPVVYAHTIVHPRSVALDWPFLKALGTQPLGHSLFADPRVERGGFEFALLDARHPLVRRAHDALGDAPVVGTAR
LPARRSVFRRGASAMLVTEVFLPALARFQPPR

Sequences:

>Translated_192_residues
MTDFPSYPRGLWRSALPPAVVYDRHWARWAVGADSLTARLRAASSRFRVQLLGQRRAMPLRDEWRCLGMSGPAETLVREV
LLICDEIPVVYAHTIVHPRSVALDWPFLKALGTQPLGHSLFADPRVERGGFEFALLDARHPLVRRAHDALGDAPVVGTAR
LPARRSVFRRGASAMLVTEVFLPALARFQPPR
>Mature_191_residues
TDFPSYPRGLWRSALPPAVVYDRHWARWAVGADSLTARLRAASSRFRVQLLGQRRAMPLRDEWRCLGMSGPAETLVREVL
LICDEIPVVYAHTIVHPRSVALDWPFLKALGTQPLGHSLFADPRVERGGFEFALLDARHPLVRRAHDALGDAPVVGTARL
PARRSVFRRGASAMLVTEVFLPALARFQPPR

Specific function: Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4- hydroxybenzoate (4HB) for the ubiquinone pathway [H]

COG id: COG3161

COG function: function code H; 4-hydroxybenzoate synthetase (chorismate lyase)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007440 [H]

Pfam domain/function: PF04345 Chor_lyase [H]

EC number: =4.1.3.40 [H]

Molecular weight: Translated: 21505; Mature: 21374

Theoretical pI: Translated: 11.65; Mature: 11.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDFPSYPRGLWRSALPPAVVYDRHWARWAVGADSLTARLRAASSRFRVQLLGQRRAMPL
CCCCCCCCHHHHHHCCCCCEECCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
RDEWRCLGMSGPAETLVREVLLICDEIPVVYAHTIVHPRSVALDWPFLKALGTQPLGHSL
CCCCEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEECCHHHHHHCCCCCCCCC
FADPRVERGGFEFALLDARHPLVRRAHDALGDAPVVGTARLPARRSVFRRGASAMLVTEV
CCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
FLPALARFQPPR
HHHHHHHCCCCC
>Mature Secondary Structure 
TDFPSYPRGLWRSALPPAVVYDRHWARWAVGADSLTARLRAASSRFRVQLLGQRRAMPL
CCCCCCCHHHHHHCCCCCEECCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
RDEWRCLGMSGPAETLVREVLLICDEIPVVYAHTIVHPRSVALDWPFLKALGTQPLGHSL
CCCCEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEECCHHHHHHCCCCCCCCC
FADPRVERGGFEFALLDARHPLVRRAHDALGDAPVVGTARLPARRSVFRRGASAMLVTEV
CCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
FLPALARFQPPR
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]