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The map label for this gene is omlA [H]

Identifier: 187930053

GI number: 187930053

Start: 3111661

End: 3112317

Strand: Reverse

Name: omlA [H]

Synonym: Rpic_2985

Alternate gene names: 187930053

Gene position: 3112317-3111661 (Counterclockwise)

Preceding gene: 187930055

Following gene: 187930052

Centisome position: 78.94

GC content: 63.32

Gene sequence:

>657_bases
ATGACCTTTCCCTTTGCGCGCAGTCCTGTCCATTTTGCCAACGTCGCCCGTCGCGGCGGCCTGTTGGTGGGTGCCATGCT
CGCCGCGTCGGCGTTGCTGGCCGGATGCGGCACCTATGACAGCACCACGCGCAAGATCGCCAATGCCATCACGCCGTATC
GCATCGATATCGTGCAAGGCAATTTCGTCTCGCGAGAACAGGCTGCACAACTCAAGGAAGGCATGACGCGTGACCAGGTG
CGCTTTGTACTCGGTACGCCACTGTTGACCGATATGTTCCATGCCAACCGCTGGGATTACATCTTTTCGTTCAAGCGCGG
CAACACGGCCGTTGTGCAGGAACGCAAGCTGACCGTGTGGTTTGATGGCGAACGCCTCGCCAAGTGGGTGGGCGCTGATG
AGCTGCCGTCCGAATCGGAGCTGATCTCTGAGATCGACGGCATCAAACGCCCGAAGAAGGATGCCGCGCAAGCCGCTGCT
GCTGCGGGTGCCGCACCGGCAGCGCGCGCTCCGTCGATCCCGTCGGCTGAGGTGACTGACCGCGTGCAATCGACCGCCGG
CTCCAAAAACAGTGTTGACGTGACGCTGCCGGAGCGCCGCACGGGCGGTGGCGGCACCGACACCAGCGTTCCGCCGCCGG
CTACGACGTCGCCCTGA

Upstream 100 bases:

>100_bases
TGGCGGCAAAAGTCCTACTGACGGGCCTGCACAATGTGCCTGGCCGCCGCCGATTCCTCCTGTACCGGCATGTCCGGAAC
CGTTTGAAGGCCGATCGCTC

Downstream 100 bases:

>100_bases
GCGCCCAGGCATCGGCACACCATCTTCGAGCGAGCGGCGGACGGGTTCCGCCGCTTGTGCGTTTGACAGACCGTTTTCTC
TTTTGCAGCTTTTCGCTTCC

Product: SmpA/OmlA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MTFPFARSPVHFANVARRGGLLVGAMLAASALLAGCGTYDSTTRKIANAITPYRIDIVQGNFVSREQAAQLKEGMTRDQV
RFVLGTPLLTDMFHANRWDYIFSFKRGNTAVVQERKLTVWFDGERLAKWVGADELPSESELISEIDGIKRPKKDAAQAAA
AAGAAPAARAPSIPSAEVTDRVQSTAGSKNSVDVTLPERRTGGGGTDTSVPPPATTSP

Sequences:

>Translated_218_residues
MTFPFARSPVHFANVARRGGLLVGAMLAASALLAGCGTYDSTTRKIANAITPYRIDIVQGNFVSREQAAQLKEGMTRDQV
RFVLGTPLLTDMFHANRWDYIFSFKRGNTAVVQERKLTVWFDGERLAKWVGADELPSESELISEIDGIKRPKKDAAQAAA
AAGAAPAARAPSIPSAEVTDRVQSTAGSKNSVDVTLPERRTGGGGTDTSVPPPATTSP
>Mature_217_residues
TFPFARSPVHFANVARRGGLLVGAMLAASALLAGCGTYDSTTRKIANAITPYRIDIVQGNFVSREQAAQLKEGMTRDQVR
FVLGTPLLTDMFHANRWDYIFSFKRGNTAVVQERKLTVWFDGERLAKWVGADELPSESELISEIDGIKRPKKDAAQAAAA
AGAAPAARAPSIPSAEVTDRVQSTAGSKNSVDVTLPERRTGGGGTDTSVPPPATTSP

Specific function: May have a structural role in maintaining the cell envelope integrity [H]

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=98, Percent_Identity=37.7551020408163, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 23261; Mature: 23129

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFPFARSPVHFANVARRGGLLVGAMLAASALLAGCGTYDSTTRKIANAITPYRIDIVQG
CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEEEC
NFVSREQAAQLKEGMTRDQVRFVLGTPLLTDMFHANRWDYIFSFKRGNTAVVQERKLTVW
CCCCHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCCEEEEECCCCEEEEEECEEEEE
FDGERLAKWVGADELPSESELISEIDGIKRPKKDAAQAAAAAGAAPAARAPSIPSAEVTD
ECHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
RVQSTAGSKNSVDVTLPERRTGGGGTDTSVPPPATTSP
HHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TFPFARSPVHFANVARRGGLLVGAMLAASALLAGCGTYDSTTRKIANAITPYRIDIVQG
CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEEEC
NFVSREQAAQLKEGMTRDQVRFVLGTPLLTDMFHANRWDYIFSFKRGNTAVVQERKLTVW
CCCCHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCCEEEEECCCCEEEEEECEEEEE
FDGERLAKWVGADELPSESELISEIDGIKRPKKDAAQAAAAAGAAPAARAPSIPSAEVTD
ECHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
RVQSTAGSKNSVDVTLPERRTGGGGTDTSVPPPATTSP
HHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973334 [H]