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The map label for this gene is 187930004

Identifier: 187930004

GI number: 187930004

Start: 3051516

End: 3053438

Strand: Reverse

Name: 187930004

Synonym: Rpic_2936

Alternate gene names: NA

Gene position: 3053438-3051516 (Counterclockwise)

Preceding gene: 187930005

Following gene: 187930003

Centisome position: 77.45

GC content: 57.88

Gene sequence:

>1923_bases
ATGGCAAGCAAGTCGTTAGGAAAGACGCCGACTCTTCTGCCGATTAAGAAGGGCAGCAGCTACAGTCACGATGGGCGCGC
ATACACAATTCTCCGCTACGCCGCCTTGGACCAGGTTCTCGCACGCGAGGACGCGTCGGGAGCGATTGTCATTTTGAACA
TAGGGTCGCTCAAGCCTCCGTTCAGAGGCAGTGATGGCTCGCCCGAGCCCCAAGGCCAGATCGACCTCGAAGACGTATCG
GATGACGACTGGGAAGAGGCGCAAAGCCGCCTAGACATCATTAGTCCTCTGCTCGCTCTTCGGCGGAATCGAAAGAAAGC
AGACTACGTCGCTGTGGCAGCCGACGCAGACGTGAGTATCGCGACGCTCTACAACTGGCTGCGGACCTACCTTGCGTCTG
AACAGCTGTCTTCGCTAATACCGACGCGCAAGAGCGGTGGCCGCGGGCGCAGTCGCCTCGCGCCAGAAGTGAAGCTGATC
TTGGACAACTACGTTCAAGAGCACTATCTGACCATGCAAAAGCCGTCCGTAGCGAAGGCGGCCAGGGAAATTCGCCGCCT
GTGCTATGTCGCGGAGCTTGAGCCTCTTCCGGCCGAGTCGACGATACACCGGCATCTAAGTTGGTTGGATGAACAAGAAG
CGCTCAAGCGTCGTGAGGGGCGCCGCGCCGCTGAGCAACGATTTAGCGTGAATAAGGGATCCATTCCGGATGCTGAGTGG
CCTCTTGCCATGGTGCAGGTCGATCACACTCTGTTGCCCGTCATCATCGTGGACGACAAGCACCGCAAGTCGATCGGACG
GGCCTGGATCACTTTGGCAATCGATGTTTTCAGCCGCGCATGTTTGGGCATGTACTTGTCTCTGGATCCACCTTCAGCGA
TGTCCGCGGGCATGTGCATCTCGCACGCCATGTTGGATAAGGGGGAATGGATGGCGCGGCTGGGGTGCGGAGATATTGAG
TGGCCCTTCCGCGGCCCCATAGACGTACTCCATATGGACAACGCCAAGGAATTCAGAGGCAAGATGCTGGCCGTCGCTGC
GAGGGAGTACCACATCGATATTCACCTCCGGCCGGTAAAGCAGCCTCGCTACGGTGCGCACATCGAGCGGCTCATGGGCA
CCGTATCGGAGGAGTTGAAAGAGCTCAAAGGGGCAACGTTCGCGAATCCCCAGCAGAAAGGAGAGTACGACGCCGAGGGC
AATGCCTGCATGACTATCGATGAGCTGGAGAAATGGCTTGTCCTGATGTTCGCTCGATATCATCGAGACGTTCACGCGGG
CATTGGCACGACGCCGCTGACCAAATGGACCGAAGGCATTCTCGGCACACGGGGAAAGATGGGCCGTGGAATCCCACCGA
TAGTCGCCGATCCCGAGAAGGTCCGCATCGACTTCATGCCATTCGAGGAGCGAGCGATCCGAGGAGATGGAGTTGTCAAC
GACAACATCCACTACTTCCACGATGTCTTGAGACCGTGGATTGGGGAACGCGATCCTGACAATCCGAAGCGAGGTAAGAA
GTTCCGGTTCCGCTATGACCCACGCGACATGAGCGTGTTGTACTTCTTCGATACCGATCTCAAACGGTATCAGGCGATTC
CCTATCGAGATTCGAGCTTGCCGCCGGCAAGCATCTGGGAGATACGTGCAGCCAACAATGCAGCGAAGGCTGCGGGCATG
AAGGAATACAGCGAACGGGACTTGTTTGCGCTGATCGCGCGGCAGCGCGAACTCGAAGAAGCTGCCGCTGAAAAAAGCAA
GGCGGCACGTCGTGCTGAGCAGCAGCGCAAACAGCAGGACAAAGCTCGCGCGCAAAAATCTAAAGACCTGCCACGGGCCT
CGAAGATCGAGCCGTCCAGGCTTGCGCCGGCAGTCCGTGGGTACGACCCAGACGATATTCAGGCACTGAGCGACGATGAA
TAG

Upstream 100 bases:

>100_bases
TGATTCCCGTGCTTTGGCATCTTGTTGCTCACGGCGAAATCCAAGCGGACTTGCAGATTCCGTTGACGGATAGCACGCAG
CTATTTCTACCGAGCTAGCC

Downstream 100 bases:

>100_bases
CACGACGGTTGAGTATGGCCACCTCAGTCCAAAGGCACAGGAGTACCTGGACCTGCCAACCAAGGATCGGATTCGGAAGA
TTCAGGAGGGCACGTGGCTA

Product: TniA transposase

Products: NA

Alternate protein names: ORF 480 [H]

Number of amino acids: Translated: 640; Mature: 639

Protein sequence:

>640_residues
MASKSLGKTPTLLPIKKGSSYSHDGRAYTILRYAALDQVLAREDASGAIVILNIGSLKPPFRGSDGSPEPQGQIDLEDVS
DDDWEEAQSRLDIISPLLALRRNRKKADYVAVAADADVSIATLYNWLRTYLASEQLSSLIPTRKSGGRGRSRLAPEVKLI
LDNYVQEHYLTMQKPSVAKAAREIRRLCYVAELEPLPAESTIHRHLSWLDEQEALKRREGRRAAEQRFSVNKGSIPDAEW
PLAMVQVDHTLLPVIIVDDKHRKSIGRAWITLAIDVFSRACLGMYLSLDPPSAMSAGMCISHAMLDKGEWMARLGCGDIE
WPFRGPIDVLHMDNAKEFRGKMLAVAAREYHIDIHLRPVKQPRYGAHIERLMGTVSEELKELKGATFANPQQKGEYDAEG
NACMTIDELEKWLVLMFARYHRDVHAGIGTTPLTKWTEGILGTRGKMGRGIPPIVADPEKVRIDFMPFEERAIRGDGVVN
DNIHYFHDVLRPWIGERDPDNPKRGKKFRFRYDPRDMSVLYFFDTDLKRYQAIPYRDSSLPPASIWEIRAANNAAKAAGM
KEYSERDLFALIARQRELEEAAAEKSKAARRAEQQRKQQDKARAQKSKDLPRASKIEPSRLAPAVRGYDPDDIQALSDDE

Sequences:

>Translated_640_residues
MASKSLGKTPTLLPIKKGSSYSHDGRAYTILRYAALDQVLAREDASGAIVILNIGSLKPPFRGSDGSPEPQGQIDLEDVS
DDDWEEAQSRLDIISPLLALRRNRKKADYVAVAADADVSIATLYNWLRTYLASEQLSSLIPTRKSGGRGRSRLAPEVKLI
LDNYVQEHYLTMQKPSVAKAAREIRRLCYVAELEPLPAESTIHRHLSWLDEQEALKRREGRRAAEQRFSVNKGSIPDAEW
PLAMVQVDHTLLPVIIVDDKHRKSIGRAWITLAIDVFSRACLGMYLSLDPPSAMSAGMCISHAMLDKGEWMARLGCGDIE
WPFRGPIDVLHMDNAKEFRGKMLAVAAREYHIDIHLRPVKQPRYGAHIERLMGTVSEELKELKGATFANPQQKGEYDAEG
NACMTIDELEKWLVLMFARYHRDVHAGIGTTPLTKWTEGILGTRGKMGRGIPPIVADPEKVRIDFMPFEERAIRGDGVVN
DNIHYFHDVLRPWIGERDPDNPKRGKKFRFRYDPRDMSVLYFFDTDLKRYQAIPYRDSSLPPASIWEIRAANNAAKAAGM
KEYSERDLFALIARQRELEEAAAEKSKAARRAEQQRKQQDKARAQKSKDLPRASKIEPSRLAPAVRGYDPDDIQALSDDE
>Mature_639_residues
ASKSLGKTPTLLPIKKGSSYSHDGRAYTILRYAALDQVLAREDASGAIVILNIGSLKPPFRGSDGSPEPQGQIDLEDVSD
DDWEEAQSRLDIISPLLALRRNRKKADYVAVAADADVSIATLYNWLRTYLASEQLSSLIPTRKSGGRGRSRLAPEVKLIL
DNYVQEHYLTMQKPSVAKAAREIRRLCYVAELEPLPAESTIHRHLSWLDEQEALKRREGRRAAEQRFSVNKGSIPDAEWP
LAMVQVDHTLLPVIIVDDKHRKSIGRAWITLAIDVFSRACLGMYLSLDPPSAMSAGMCISHAMLDKGEWMARLGCGDIEW
PFRGPIDVLHMDNAKEFRGKMLAVAAREYHIDIHLRPVKQPRYGAHIERLMGTVSEELKELKGATFANPQQKGEYDAEGN
ACMTIDELEKWLVLMFARYHRDVHAGIGTTPLTKWTEGILGTRGKMGRGIPPIVADPEKVRIDFMPFEERAIRGDGVVND
NIHYFHDVLRPWIGERDPDNPKRGKKFRFRYDPRDMSVLYFFDTDLKRYQAIPYRDSSLPPASIWEIRAANNAAKAAGMK
EYSERDLFALIARQRELEEAAAEKSKAARRAEQQRKQQDKARAQKSKDLPRASKIEPSRLAPAVRGYDPDDIQALSDDE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR015378
- InterPro:   IPR009004 [H]

Pfam domain/function: PF09299 Mu-transpos_C; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 72245; Mature: 72114

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASKSLGKTPTLLPIKKGSSYSHDGRAYTILRYAALDQVLAREDASGAIVILNIGSLKPP
CCCCCCCCCCCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
FRGSDGSPEPQGQIDLEDVSDDDWEEAQSRLDIISPLLALRRNRKKADYVAVAADADVSI
CCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHH
ATLYNWLRTYLASEQLSSLIPTRKSGGRGRSRLAPEVKLILDNYVQEHYLTMQKPSVAKA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCCHHHHH
AREIRRLCYVAELEPLPAESTIHRHLSWLDEQEALKRREGRRAAEQRFSVNKGSIPDAEW
HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PLAMVQVDHTLLPVIIVDDKHRKSIGRAWITLAIDVFSRACLGMYLSLDPPSAMSAGMCI
CEEEEEECCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHH
SHAMLDKGEWMARLGCGDIEWPFRGPIDVLHMDNAKEFRGKMLAVAAREYHIDIHLRPVK
HHHHHCCCCHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHEEEEEEEEEEEEEEECC
QPRYGAHIERLMGTVSEELKELKGATFANPQQKGEYDAEGNACMTIDELEKWLVLMFARY
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCEEEEHHHHHHHHHHHHHHH
HRDVHAGIGTTPLTKWTEGILGTRGKMGRGIPPIVADPEKVRIDFMPFEERAIRGDGVVN
HHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHCCCCCCC
DNIHYFHDVLRPWIGERDPDNPKRGKKFRFRYDPRDMSVLYFFDTDLKRYQAIPYRDSSL
CCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCHHHHCCCCCCCCCC
PPASIWEIRAANNAAKAAGMKEYSERDLFALIARQRELEEAAAEKSKAARRAEQQRKQQD
CCCHHEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KARAQKSKDLPRASKIEPSRLAPAVRGYDPDDIQALSDDE
HHHHHHHHCCCCCCCCCHHHHCCHHCCCCHHHHCCCCCCC
>Mature Secondary Structure 
ASKSLGKTPTLLPIKKGSSYSHDGRAYTILRYAALDQVLAREDASGAIVILNIGSLKPP
CCCCCCCCCCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
FRGSDGSPEPQGQIDLEDVSDDDWEEAQSRLDIISPLLALRRNRKKADYVAVAADADVSI
CCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHH
ATLYNWLRTYLASEQLSSLIPTRKSGGRGRSRLAPEVKLILDNYVQEHYLTMQKPSVAKA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCCHHHHH
AREIRRLCYVAELEPLPAESTIHRHLSWLDEQEALKRREGRRAAEQRFSVNKGSIPDAEW
HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PLAMVQVDHTLLPVIIVDDKHRKSIGRAWITLAIDVFSRACLGMYLSLDPPSAMSAGMCI
CEEEEEECCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHH
SHAMLDKGEWMARLGCGDIEWPFRGPIDVLHMDNAKEFRGKMLAVAAREYHIDIHLRPVK
HHHHHCCCCHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHEEEEEEEEEEEEEEECC
QPRYGAHIERLMGTVSEELKELKGATFANPQQKGEYDAEGNACMTIDELEKWLVLMFARY
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCEEEEHHHHHHHHHHHHHHH
HRDVHAGIGTTPLTKWTEGILGTRGKMGRGIPPIVADPEKVRIDFMPFEERAIRGDGVVN
HHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHCCCCCCC
DNIHYFHDVLRPWIGERDPDNPKRGKKFRFRYDPRDMSVLYFFDTDLKRYQAIPYRDSSL
CCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCHHHHCCCCCCCCCC
PPASIWEIRAANNAAKAAGMKEYSERDLFALIARQRELEEAAAEKSKAARRAEQQRKQQD
CCCHHEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KARAQKSKDLPRASKIEPSRLAPAVRGYDPDDIQALSDDE
HHHHHHHHCCCCCCCCCHHHHCCHHCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2170815 [H]