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The map label for this gene is rnk [H]

Identifier: 187929940

GI number: 187929940

Start: 2978392

End: 2978799

Strand: Reverse

Name: rnk [H]

Synonym: Rpic_2872

Alternate gene names: 187929940

Gene position: 2978799-2978392 (Counterclockwise)

Preceding gene: 187929941

Following gene: 187929938

Centisome position: 75.56

GC content: 66.91

Gene sequence:

>408_bases
ATGGCCAAAGCAGCCGCCATCTACTTGACCGAGCTGGACCTCACCCGCCTGGAAAACGCCGCCAACCGCGCGGGCAGCAA
CTCGCCGCTGGCGGATCTGGTCGACGACCTGATTGCCCGCGCCAACGTGGTGCCCAGCAACAAGATTCCCGCCGATGTGG
TGACCATGAACTCGGTCGTGTGCGTGGTGGACGACGCCGGCGCCGAGCAAAAGTGGACGCTCGTCTACCCGGAAGAGGCC
AACGTGGCGTCGGCCAAGCTGTCGGTGCTCTCGCCGATGGGCGCTGCGCTGCTGGGCGCGCGCGCGGGCAAGTCGGTCAA
ATACTCCGCGCCCAATGGTGCTCAGCGTTCGTTGCGCATCGATCGCGTGGCGTTCCAGCCCGAGGCGGCCGGCCAGCACA
CGCTGTAA

Upstream 100 bases:

>100_bases
TGTGTGCCCGCTGGTTTCCTTGCCGCTGCTTTGCGTTGGCCTGTGCGGCTATCGGCAGCGGCTTTGCTTCGTGTTGAACA
CAGACTTGTAGGAGATCGTC

Downstream 100 bases:

>100_bases
GCCGGCTGCGTCCTATCGCGAGAGGCTGTACCCGACGCGCAACTGCGAGCCCAGCTTGTGGTTGTAGTCGAGCAGGCTCT
CGCCGTAGCCGGTGAAATAC

Product: GreA/GreB family elongation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MAKAAAIYLTELDLTRLENAANRAGSNSPLADLVDDLIARANVVPSNKIPADVVTMNSVVCVVDDAGAEQKWTLVYPEEA
NVASAKLSVLSPMGAALLGARAGKSVKYSAPNGAQRSLRIDRVAFQPEAAGQHTL

Sequences:

>Translated_135_residues
MAKAAAIYLTELDLTRLENAANRAGSNSPLADLVDDLIARANVVPSNKIPADVVTMNSVVCVVDDAGAEQKWTLVYPEEA
NVASAKLSVLSPMGAALLGARAGKSVKYSAPNGAQRSLRIDRVAFQPEAAGQHTL
>Mature_134_residues
AKAAAIYLTELDLTRLENAANRAGSNSPLADLVDDLIARANVVPSNKIPADVVTMNSVVCVVDDAGAEQKWTLVYPEEAN
VASAKLSVLSPMGAALLGARAGKSVKYSAPNGAQRSLRIDRVAFQPEAAGQHTL

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=131, Percent_Identity=36.6412213740458, Blast_Score=81, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14115; Mature: 13984

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAAAIYLTELDLTRLENAANRAGSNSPLADLVDDLIARANVVPSNKIPADVVTMNSVV
CCCCEEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCEE
CVVDDAGAEQKWTLVYPEEANVASAKLSVLSPMGAALLGARAGKSVKYSAPNGAQRSLRI
EEEECCCCCCEEEEECCCCCCCCHHHHHHHCCHHHHHHHHCCCCCEEECCCCCCCCCEEE
DRVAFQPEAAGQHTL
EEEEECCCCCCCCCC
>Mature Secondary Structure 
AKAAAIYLTELDLTRLENAANRAGSNSPLADLVDDLIARANVVPSNKIPADVVTMNSVV
CCCEEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCEE
CVVDDAGAEQKWTLVYPEEANVASAKLSVLSPMGAALLGARAGKSVKYSAPNGAQRSLRI
EEEECCCCCCEEEEECCCCCCCCHHHHHHHCCHHHHHHHHCCCCCEEECCCCCCCCCEEE
DRVAFQPEAAGQHTL
EEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]