BacMap

Definition	Ralstonia pickettii 12J chromosome chromosome 1, complete sequence.
Accession	NC_010682
Length	3,942,557

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The map label for this gene is ygfF [H]

Identifier: 187929841

GI number: 187929841

Start: 2883871

End: 2884617

Strand: Reverse

Name: ygfF [H]

Synonym: Rpic_2772

Alternate gene names: 187929841

Gene position: 2884617-2883871 (Counterclockwise)

Preceding gene: 187929846

Following gene: 187929839

Centisome position: 73.17

GC content: 68.94

Gene sequence:

>747_bases
ATGTCCAAGACCATCGTCATTACCGGCGGGAGCCGGGGTATCGGTCGCGCCACGGCGGTGCTGTGCGCGCAACGCGGCTG
GTCTGTCGCGCTGCAATACCGCGGCAACCGCCAGGCGGCGGAAGAGACGGTGGGGCTGATCGAACAGGCCGGCGGCCATG
CGCTGGCGGTGCAGGGCGACGTGTCGAACGACGAAGACGTCATCGCGCTATTCGAGGCAGCGACGGGTCGCTTTGGTGCG
CTGCATGGGGTGGTCAACAACGCCGGCATCGTGGCCGAGGCGCAGGACGTGGCCGATATGACCACGCACCGGCTGCGGAC
GATGTTCGAGACCAATGTGCTGGGCGCCTTTCTGGTCGCGCGCGAGGCGGCGCGGCGGTTGTCGACGTCGCGCGGTGGTG
TGGGCGGTTCGGTGGTGAACGTGTCGTCGGCGGCGTCGCGCCTGGGGTCGCCGCACGAATATGTCGACTACGCCGCCTCA
AAGGGTGCCGTCGACACCATGACGCTGGGCTTGGCGCGTGAACTCGGGCGCGATGGCGTACGTGTCAATGCCGTGCGCCC
CGGTTTGATCGAGACCGATATTCACGCCTCTGGCGGCCAGCCCGACCGCGCTCAGCGCCTTGGCAGCGGCACGCCGATCG
GCCGCCCCGGCACGCCGCAAGAAGTGGCCGAGACCATCGTCTGGCTGCTCTCCGATGCGGCGTCGTACGTGACTGGCGCG
CTGCTGGATTGCGCGGGTGGGCGCTGA

Upstream 100 bases:

>100_bases
TCGGCCCGAATGAATTCGCCGGATTCGGACACATCCCTCGATGTCAAAACTTCGGTATCTCGGCACAATTGCGAACACAA
CTACACATCAGGAGACCGGC

Downstream 100 bases:

>100_bases
CGGGTGATCAGGCGTCCGCCCCCGCGCGGAAGGTATCGCACTGGCGAAGGTCGCCGCCATCGAAGCCCTGACGGAACCAG
TGCATGCGCTGCTCGGACGT

Product: glucose-1-dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MSKTIVITGGSRGIGRATAVLCAQRGWSVALQYRGNRQAAEETVGLIEQAGGHALAVQGDVSNDEDVIALFEAATGRFGA
LHGVVNNAGIVAEAQDVADMTTHRLRTMFETNVLGAFLVAREAARRLSTSRGGVGGSVVNVSSAASRLGSPHEYVDYAAS
KGAVDTMTLGLARELGRDGVRVNAVRPGLIETDIHASGGQPDRAQRLGSGTPIGRPGTPQEVAETIVWLLSDAASYVTGA
LLDCAGGR

Sequences:

>Translated_248_residues
MSKTIVITGGSRGIGRATAVLCAQRGWSVALQYRGNRQAAEETVGLIEQAGGHALAVQGDVSNDEDVIALFEAATGRFGA
LHGVVNNAGIVAEAQDVADMTTHRLRTMFETNVLGAFLVAREAARRLSTSRGGVGGSVVNVSSAASRLGSPHEYVDYAAS
KGAVDTMTLGLARELGRDGVRVNAVRPGLIETDIHASGGQPDRAQRLGSGTPIGRPGTPQEVAETIVWLLSDAASYVTGA
LLDCAGGR
>Mature_247_residues
SKTIVITGGSRGIGRATAVLCAQRGWSVALQYRGNRQAAEETVGLIEQAGGHALAVQGDVSNDEDVIALFEAATGRFGAL
HGVVNNAGIVAEAQDVADMTTHRLRTMFETNVLGAFLVAREAARRLSTSRGGVGGSVVNVSSAASRLGSPHEYVDYAASK
GAVDTMTLGLARELGRDGVRVNAVRPGLIETDIHASGGQPDRAQRLGSGTPIGRPGTPQEVAETIVWLLSDAASYVTGAL
LDCAGGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=35.2226720647773, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI15277342, Length=249, Percent_Identity=32.9317269076305, Blast_Score=105, Evalue=3e-23,
Organism=Homo sapiens, GI59889578, Length=206, Percent_Identity=34.9514563106796, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI19923817, Length=253, Percent_Identity=29.6442687747036, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI7705925, Length=177, Percent_Identity=35.0282485875706, Blast_Score=87, Evalue=9e-18,
Organism=Homo sapiens, GI109715829, Length=241, Percent_Identity=28.6307053941909, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4758504, Length=237, Percent_Identity=30.379746835443, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=28.5140562248996, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=30.4, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI40254986, Length=207, Percent_Identity=28.9855072463768, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI210032110, Length=193, Percent_Identity=29.5336787564767, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI31542939, Length=198, Percent_Identity=30.8080808080808, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI2367175, Length=243, Percent_Identity=54.320987654321, Blast_Score=269, Evalue=1e-73,
Organism=Escherichia coli, GI1789378, Length=245, Percent_Identity=35.1020408163265, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1788459, Length=250, Percent_Identity=32.8, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=32.2448979591837, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=31.9838056680162, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=31.3253012048193, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI2367365, Length=239, Percent_Identity=34.3096234309623, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=30.4878048780488, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=27.6422764227642, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1786812, Length=247, Percent_Identity=29.9595141700405, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789057, Length=263, Percent_Identity=27.3764258555133, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787891, Length=247, Percent_Identity=30.7692307692308, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787526, Length=248, Percent_Identity=27.0161290322581, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI87082100, Length=246, Percent_Identity=28.4552845528455, Blast_Score=72, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=256, Percent_Identity=35.9375, Blast_Score=124, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=35.2226720647773, Blast_Score=119, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=35.0597609561753, Blast_Score=118, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=31.5384615384615, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17562904, Length=263, Percent_Identity=30.0380228136882, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17563726, Length=258, Percent_Identity=31.7829457364341, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=32.421875, Blast_Score=100, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=32.7868852459016, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17536651, Length=252, Percent_Identity=30.5555555555556, Blast_Score=99, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17565030, Length=254, Percent_Identity=29.9212598425197, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=32.5670498084291, Blast_Score=97, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=33.739837398374, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI72000259, Length=259, Percent_Identity=29.7297297297297, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17562910, Length=268, Percent_Identity=32.8358208955224, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17531453, Length=265, Percent_Identity=31.6981132075472, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=28.6852589641434, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=31.6981132075472, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17538480, Length=260, Percent_Identity=29.6153846153846, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=31.6793893129771, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=30.9433962264151, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI193204405, Length=265, Percent_Identity=31.6981132075472, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17560676, Length=245, Percent_Identity=30.6122448979592, Blast_Score=89, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=30.6513409961686, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17544670, Length=247, Percent_Identity=29.1497975708502, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=31.8007662835249, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=30.7116104868914, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17538182, Length=224, Percent_Identity=29.9107142857143, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17562908, Length=261, Percent_Identity=30.6513409961686, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17561272, Length=244, Percent_Identity=30.327868852459, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI71982365, Length=198, Percent_Identity=29.7979797979798, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17558628, Length=195, Percent_Identity=29.7435897435897, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=253, Percent_Identity=28.0632411067194, Blast_Score=80, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6323882, Length=233, Percent_Identity=29.6137339055794, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=254, Percent_Identity=25.1968503937008, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322226, Length=198, Percent_Identity=27.7777777777778, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=33.8645418326693, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI23397609, Length=255, Percent_Identity=34.5098039215686, Blast_Score=117, Evalue=6e-27,
Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=33.4661354581673, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24639444, Length=247, Percent_Identity=34.412955465587, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=32.2709163346614, Blast_Score=105, Evalue=2e-23,
Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=29.8804780876494, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24644337, Length=210, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=32.1138211382114, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI17737361, Length=235, Percent_Identity=32.3404255319149, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21357673, Length=220, Percent_Identity=30.4545454545455, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24640492, Length=194, Percent_Identity=29.8969072164948, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI116007236, Length=240, Percent_Identity=30.4166666666667, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24648944, Length=207, Percent_Identity=26.5700483091787, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25592; Mature: 25461

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTIVITGGSRGIGRATAVLCAQRGWSVALQYRGNRQAAEETVGLIEQAGGHALAVQGD
CCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECC
VSNDEDVIALFEAATGRFGALHGVVNNAGIVAEAQDVADMTTHRLRTMFETNVLGAFLVA
CCCCCCEEEEEECCCCCHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
REAARRLSTSRGGVGGSVVNVSSAASRLGSPHEYVDYAASKGAVDTMTLGLARELGRDGV
HHHHHHHHHCCCCCCCCEEEHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCE
RVNAVRPGLIETDIHASGGQPDRAQRLGSGTPIGRPGTPQEVAETIVWLLSDAASYVTGA
EEEEECCCEEEECCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LLDCAGGR
HHHCCCCC
>Mature Secondary Structure 
SKTIVITGGSRGIGRATAVLCAQRGWSVALQYRGNRQAAEETVGLIEQAGGHALAVQGD
CCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECC
VSNDEDVIALFEAATGRFGALHGVVNNAGIVAEAQDVADMTTHRLRTMFETNVLGAFLVA
CCCCCCEEEEEECCCCCHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
REAARRLSTSRGGVGGSVVNVSSAASRLGSPHEYVDYAASKGAVDTMTLGLARELGRDGV
HHHHHHHHHCCCCCCCCEEEHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCE
RVNAVRPGLIETDIHASGGQPDRAQRLGSGTPIGRPGTPQEVAETIVWLLSDAASYVTGA
EEEEECCCEEEECCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LLDCAGGR
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 7764507 [H]