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The map label for this gene is ydaM [H]

Identifier: 187929770

GI number: 187929770

Start: 2813040

End: 2814707

Strand: Reverse

Name: ydaM [H]

Synonym: Rpic_2700

Alternate gene names: 187929770

Gene position: 2814707-2813040 (Counterclockwise)

Preceding gene: 187929771

Following gene: 187929767

Centisome position: 71.39

GC content: 66.61

Gene sequence:

>1668_bases
GTGAAGGCGCCTGAGCCCGCCCCTGCAACGTCGTCGCACGGCGCCTGGCTGCGCGTTGCGCCGCTGGCGCTTTGGCTGTC
GGTGGCGGTGGTGGGCGTAGGCGCCTCATGGTTTGCCGCCTGTTTCGTGGCGGATTCGATGGGTGCGCGCGACATGCAGC
AGATGGTCGATGCGCGGCGCCAGTTGGCTGCGCAGGTAGCGGAGGGAATGTCGAGCCAGATCACCGCCGACGTGGCCCTG
CTGCGCGCGCTGCCGCAGACGCTCGCGCAGATCGACGCCATCCCGCGCGCGGTGGCGCGCGTCGACACCCGGCGCTGGAA
CCTGATGGACCAGGGCTCATGTGCCGAAGAGGCGATGTCGCACCCGGAAGTGGTCGACATCGATGCTTTCCTCAACGCCA
CCGCAGGCAATCTCGGGCTGGACTACGTGTGGGTCGTGAACCAACACAATTACGTGGTGCTGGCCAATAACGCCGGTCAT
GCCGATTCGTTCGTCGGCGTGCAGTTGAGCATGCAGCCGTACATGAAGGAGGCGATGCTGGGTGGCCTGGGCGAGCAGTT
CACGATCGGCCCGGTGACGGGCGTGCCGGGCCTGTTCTTCGCCGCGCCGGTATATGACGCCGGAGGTTACCTGGTCGCAA
CAATGGGCACCAAGGTGAGCCTCGCGAGGCTGCAGCACTGGGTATCGCACCCGACATCGTTGGTGACCGATCCGAACGGC
TTGATCATTCTGTCCACCGATGCATCGCTGGTCGGCAAGGTCCTGCCGGATGCTCGCCTGCAGCACATGGGCGCCAGCGA
CCGGTACAACGCCTACCAACGCGTCGACTTCGAGCCCTGGCCCTATCAGCCTACCGCGAAGGCGCATCGCGATGTGCCCG
CCTGGGTGCCGGCCGAGGTGCGCGATACGCTGGCCTGGCGCGAGGGCAGTGCGATGCCATCGCTGACCGTGTCGCGCAAT
GCCAGTGCGGACCTCACGGTCGTCGTGGCCGAGCCGCTGCCGGCGTGGGGCCAGCAGATCGCCAACCATGCGCGCAACCG
CATGATCGGCTTTGTGTTGTTCGTGAGTGTGTTGGTGACGTTCGCGCTGGTGGCGTGGTCTTTGGTGCGCGAGCGGCAGC
ACCACCGCGTGACGCGCCATCTGAACCAGCGGCTGCAGCGCACCAACAGCGCGCTCGCCAACGAGGCGCATTTCGATCAT
CTGACCGGTGTGCTGACGCGCCGCCGGTTCCTGGCGCTGTTCGATACGGTGCTCGCGCGTGCGCACAATCGTGCCGAACC
GCTTGTGCTCGTGCTGGCCGATCTGGATCACTTCAAGCGCATCAATGACACATGGGGCCACGCTGTGGGGGACATGGCGC
TGCAGCGCTTTGCGTCGCTTGCCACGGGCGTGCTGCGCAGCAGTGATCTGGTGGGGCGTTTGGGCGGCGAGGAATTCGCC
ATGGTGATGGGACGCACCACGCTGGAAACCGCCACCGAGGTGGCCGAGCGCCTGCGTACGGCGGTGGCCGAGACGGACGA
AAGCTTCCCGACCGGGCTGTCGATGACCGTCAGCATGGGCATGACGGGCTGCCGGCCGGGCGATACCGCGTCGGAAATGC
TCAAGCGCGCCGATCTGGCGCTGTATCGCGCCAAGGAAAGCGGACGTAACCGGCACGTGGCCGGCTGA

Upstream 100 bases:

>100_bases
AGCGAATCGCGCCGGCTGCGCAACACGCGGCTTGCGCGCGAGTTGCGCGTGGCGCTGCGCTACCCGACGGTGGCGGATTT
CCTGAGCAGCGAGGTCTGAC

Downstream 100 bases:

>100_bases
CATTACCGCGCGACGCGGCCTGCGCGCCGACGGCGCAGTTCAAGATGCGTGCGCGTGCCTGACAGCGGCACACGGCGGAA
GCGCTCGCGGCGCTGTTCTT

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 555; Mature: 555

Protein sequence:

>555_residues
MKAPEPAPATSSHGAWLRVAPLALWLSVAVVGVGASWFAACFVADSMGARDMQQMVDARRQLAAQVAEGMSSQITADVAL
LRALPQTLAQIDAIPRAVARVDTRRWNLMDQGSCAEEAMSHPEVVDIDAFLNATAGNLGLDYVWVVNQHNYVVLANNAGH
ADSFVGVQLSMQPYMKEAMLGGLGEQFTIGPVTGVPGLFFAAPVYDAGGYLVATMGTKVSLARLQHWVSHPTSLVTDPNG
LIILSTDASLVGKVLPDARLQHMGASDRYNAYQRVDFEPWPYQPTAKAHRDVPAWVPAEVRDTLAWREGSAMPSLTVSRN
ASADLTVVVAEPLPAWGQQIANHARNRMIGFVLFVSVLVTFALVAWSLVRERQHHRVTRHLNQRLQRTNSALANEAHFDH
LTGVLTRRRFLALFDTVLARAHNRAEPLVLVLADLDHFKRINDTWGHAVGDMALQRFASLATGVLRSSDLVGRLGGEEFA
MVMGRTTLETATEVAERLRTAVAETDESFPTGLSMTVSMGMTGCRPGDTASEMLKRADLALYRAKESGRNRHVAG

Sequences:

>Translated_555_residues
MKAPEPAPATSSHGAWLRVAPLALWLSVAVVGVGASWFAACFVADSMGARDMQQMVDARRQLAAQVAEGMSSQITADVAL
LRALPQTLAQIDAIPRAVARVDTRRWNLMDQGSCAEEAMSHPEVVDIDAFLNATAGNLGLDYVWVVNQHNYVVLANNAGH
ADSFVGVQLSMQPYMKEAMLGGLGEQFTIGPVTGVPGLFFAAPVYDAGGYLVATMGTKVSLARLQHWVSHPTSLVTDPNG
LIILSTDASLVGKVLPDARLQHMGASDRYNAYQRVDFEPWPYQPTAKAHRDVPAWVPAEVRDTLAWREGSAMPSLTVSRN
ASADLTVVVAEPLPAWGQQIANHARNRMIGFVLFVSVLVTFALVAWSLVRERQHHRVTRHLNQRLQRTNSALANEAHFDH
LTGVLTRRRFLALFDTVLARAHNRAEPLVLVLADLDHFKRINDTWGHAVGDMALQRFASLATGVLRSSDLVGRLGGEEFA
MVMGRTTLETATEVAERLRTAVAETDESFPTGLSMTVSMGMTGCRPGDTASEMLKRADLALYRAKESGRNRHVAG
>Mature_555_residues
MKAPEPAPATSSHGAWLRVAPLALWLSVAVVGVGASWFAACFVADSMGARDMQQMVDARRQLAAQVAEGMSSQITADVAL
LRALPQTLAQIDAIPRAVARVDTRRWNLMDQGSCAEEAMSHPEVVDIDAFLNATAGNLGLDYVWVVNQHNYVVLANNAGH
ADSFVGVQLSMQPYMKEAMLGGLGEQFTIGPVTGVPGLFFAAPVYDAGGYLVATMGTKVSLARLQHWVSHPTSLVTDPNG
LIILSTDASLVGKVLPDARLQHMGASDRYNAYQRVDFEPWPYQPTAKAHRDVPAWVPAEVRDTLAWREGSAMPSLTVSRN
ASADLTVVVAEPLPAWGQQIANHARNRMIGFVLFVSVLVTFALVAWSLVRERQHHRVTRHLNQRLQRTNSALANEAHFDH
LTGVLTRRRFLALFDTVLARAHNRAEPLVLVLADLDHFKRINDTWGHAVGDMALQRFASLATGVLRSSDLVGRLGGEEFA
MVMGRTTLETATEVAERLRTAVAETDESFPTGLSMTVSMGMTGCRPGDTASEMLKRADLALYRAKESGRNRHVAG

Specific function: Unknown

COG id: COG4191

COG function: function code T; Signal transduction histidine kinase regulating C4-dicarboxylate transport system

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=40.5882352941176, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI1786584, Length=158, Percent_Identity=39.873417721519, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=33.9393939393939, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI145693134, Length=162, Percent_Identity=36.4197530864198, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI87082007, Length=210, Percent_Identity=33.8095238095238, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1787802, Length=166, Percent_Identity=33.1325301204819, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788381, Length=162, Percent_Identity=34.5679012345679, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=34.5911949685535, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1788085, Length=163, Percent_Identity=33.7423312883436, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI87081977, Length=320, Percent_Identity=26.25, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081974, Length=190, Percent_Identity=27.3684210526316, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788956, Length=168, Percent_Identity=34.5238095238095, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787541, Length=162, Percent_Identity=27.7777777777778, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 60381; Mature: 60381

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAPEPAPATSSHGAWLRVAPLALWLSVAVVGVGASWFAACFVADSMGARDMQQMVDARR
CCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHH
QLAAQVAEGMSSQITADVALLRALPQTLAQIDAIPRAVARVDTRRWNLMDQGSCAEEAMS
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCC
HPEVVDIDAFLNATAGNLGLDYVWVVNQHNYVVLANNAGHADSFVGVQLSMQPYMKEAML
CCCEEEHHHHHCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCEEEEEEEHHHHHHHHHH
GGLGEQFTIGPVTGVPGLFFAAPVYDAGGYLVATMGTKVSLARLQHWVSHPTSLVTDPNG
CCCCCCEEECCCCCCCHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEECCCC
LIILSTDASLVGKVLPDARLQHMGASDRYNAYQRVDFEPWPYQPTAKAHRDVPAWVPAEV
EEEEECCHHHHHHHCCHHHHHHCCCCCCCCHHHCCCCCCCCCCCCHHHCCCCCCCCCHHH
RDTLAWREGSAMPSLTVSRNASADLTVVVAEPLPAWGQQIANHARNRMIGFVLFVSVLVT
HHHHHHCCCCCCCCEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FALVAWSLVRERQHHRVTRHLNQRLQRTNSALANEAHFDHLTGVLTRRRFLALFDTVLAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AHNRAEPLVLVLADLDHFKRINDTWGHAVGDMALQRFASLATGVLRSSDLVGRLGGEEFA
HCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHH
MVMGRTTLETATEVAERLRTAVAETDESFPTGLSMTVSMGMTGCRPGDTASEMLKRADLA
HHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH
LYRAKESGRNRHVAG
HHHHHHCCCCCCCCC
>Mature Secondary Structure
MKAPEPAPATSSHGAWLRVAPLALWLSVAVVGVGASWFAACFVADSMGARDMQQMVDARR
CCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHH
QLAAQVAEGMSSQITADVALLRALPQTLAQIDAIPRAVARVDTRRWNLMDQGSCAEEAMS
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCC
HPEVVDIDAFLNATAGNLGLDYVWVVNQHNYVVLANNAGHADSFVGVQLSMQPYMKEAML
CCCEEEHHHHHCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCEEEEEEEHHHHHHHHHH
GGLGEQFTIGPVTGVPGLFFAAPVYDAGGYLVATMGTKVSLARLQHWVSHPTSLVTDPNG
CCCCCCEEECCCCCCCHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEECCCC
LIILSTDASLVGKVLPDARLQHMGASDRYNAYQRVDFEPWPYQPTAKAHRDVPAWVPAEV
EEEEECCHHHHHHHCCHHHHHHCCCCCCCCHHHCCCCCCCCCCCCHHHCCCCCCCCCHHH
RDTLAWREGSAMPSLTVSRNASADLTVVVAEPLPAWGQQIANHARNRMIGFVLFVSVLVT
HHHHHHCCCCCCCCEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FALVAWSLVRERQHHRVTRHLNQRLQRTNSALANEAHFDHLTGVLTRRRFLALFDTVLAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AHNRAEPLVLVLADLDHFKRINDTWGHAVGDMALQRFASLATGVLRSSDLVGRLGGEEFA
HCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHH
MVMGRTTLETATEVAERLRTAVAETDESFPTGLSMTVSMGMTGCRPGDTASEMLKRADLA
HHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH
LYRAKESGRNRHVAG
HHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]