| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
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The map label for this gene is btuB [H]
Identifier: 187929738
GI number: 187929738
Start: 2780002
End: 2781885
Strand: Reverse
Name: btuB [H]
Synonym: Rpic_2667
Alternate gene names: 187929738
Gene position: 2781885-2780002 (Counterclockwise)
Preceding gene: 187929743
Following gene: 187929737
Centisome position: 70.56
GC content: 63.16
Gene sequence:
>1884_bases ATGCGCGCGCTTGCCAGCGCACGATTGGGGGTTGTTGCGGGGGCCATGGCAGGTGCGGTTGCGCCGGCCTGGGCACAAAG CAATACACAAGTAGCCAGCACGCCCGTCGGCGAGCTGAATCCGACAGTGGTGACCGCCTCGCGCAGCGAGCAGCCCCTGT CCGATGCACTGCCGCATACGACGGTCATCAGCCGCGCCGATATCGAGCGCTCGCAGGCGCCGGACGCCGTGACGCTGCTG CGTCGCGAGGCCGGCATCGAAATCGCGCAGAGCGGCGGCCCAGGCACCAACGCCAGCCTTTTCATGCGCGGCGCCGGTTC CAATCAGACGCTGGTTCTGATTGACGGTGTGCGTGTGGCGTCCGGCACCTCGGGCGGCGCGCAGATCGCGCAATTGATGG CCGATCAGATCGATCACATCGAGGTTGTGCGCGGCAACGTGTCTGCGCTGTACGGCTCCGATGCGATTGGCGGCGTGGTG CAGATTTTCACGCGCAACGGCCGTGGCCATGGCCCGCTGGCCAATGCAGAGATCGAGTACGGCGCCCGCAATACCAAGCG CGCGCAGGCTGGCATCAGCGGCTCGCTGGGCGAGAACGGCGATACATCGTTCGCGGTGTCGGTGTCGGAATTCAAGACCA ACGGCTTCTCGACCATCAACCCGCAGCAGGCGCCCAAGGCCAACCCGAACGACAACCCGTACACGAACAAGAGCGTGTCG GCGCAGTTGTCGCATCGCTTCTCGGCAGATTGGCAAGCGGGCCTGACGTACTTCCAGACCTGGGGCGATGTCAGTTACGA CAACGCCTTCGGCAAGCCGACCGATGACAACGTCGCACACAACGTAGTGCGCTCGATGTCGGCCTACGTGGACGGCAAGG TAACGCAGGATTGGAAGACGCGCCTGACGCTGTCGCAGGGCGATGACCGCAGCTTGAATTACACGAACGGCGTGTTGCAG GTGCCGGCGCGCTTCAACACACGCAATCAGACGGCGAGCTGGCAGAACGACTGGGCCTTCATGCCCGATCAGCTGCTCAA GGTGGGCCTGGAGCATCTGCAGACCAGTATCGACAGCGATGCCTACAACGTGCCCACGCGCAACGTTGATTCCGGCTACA TCGGTTACGAAGGCAAGTTTGGCCCGCACCAGTTGCAGCTGAACCTGCGCCGCGACCGCTACTCGGACTTCGGTGGCGCC AACAGCTACTACGCCGGCTACGGCTTCGCATTCAACCCGCAATGGAAGGCGGTTGCGAGTGTGAGCAATGCCTTCCGCGC ACCCAGCTTCAACGAGTTGTACTACCCGTTCTTCGGCAACCCGAACGTGCAGCCCGAGAAGGCGCGCTCGGTGGAAGGCG GCGTGGAATACAGCGGCGCGATCGGCCTGGTGCGCGTGACGGTGTTCGAGACGGACTACAGCAACCTGATCACGGCGGTA TGCGATGCAGATTTCAATTGCTCGGCAGCCAACGTCAACCGCGCACGCGTGAACGGGCTGGAGACGTCGTATCGGGGTTC GATCTATGGCGTGGATCTGCGTGCGAGCTTTACCATGCAGAACCCGCAGGACCTGTCGGCCAACCAGTTGCTCTCGCGCC GCGCACGGCACTTCGGCAGCGTCTCGGCGTACAAGACGTTCGGGCCGTTCTCGGCGGGCGTGGAGTGGAATGCAGCGGGC GACCGCCAGGATTCGACCAAGACGCTCGGTGGCTATGGCCTGCTGAACCTGGTCGGCCGCTACCAGATCACGCCTGACTG GGCAGTGTCGGCACGTGTTGAAAACGTGACGAACAAGAACTACCAGTTGATCTATCCGTACAACACGGCGTCGCGTGGGG TGTTCTTCACGCTGTCGTGGCAACAGCACGAACCGAAGCGATGA
Upstream 100 bases:
>100_bases GCTGCCAGCGACCCGCGGGGGAACGGGTCCGGCTGACGCTTCTTGTCTTTTCAACATGAGCTTGACTACAAAGCGGCCAC TCCGGATGCCCCGGACGGCC
Downstream 100 bases:
>100_bases CAACACCTGCACTGCCCGCACGCGGTTTTGCCTGGCGACTGTGGTCGCTGCTGGCACTCGCGTGCGTGGTGGTGCTGGCG GCGTCGTTGATGCTCGGCAG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 627; Mature: 627
Protein sequence:
>627_residues MRALASARLGVVAGAMAGAVAPAWAQSNTQVASTPVGELNPTVVTASRSEQPLSDALPHTTVISRADIERSQAPDAVTLL RREAGIEIAQSGGPGTNASLFMRGAGSNQTLVLIDGVRVASGTSGGAQIAQLMADQIDHIEVVRGNVSALYGSDAIGGVV QIFTRNGRGHGPLANAEIEYGARNTKRAQAGISGSLGENGDTSFAVSVSEFKTNGFSTINPQQAPKANPNDNPYTNKSVS AQLSHRFSADWQAGLTYFQTWGDVSYDNAFGKPTDDNVAHNVVRSMSAYVDGKVTQDWKTRLTLSQGDDRSLNYTNGVLQ VPARFNTRNQTASWQNDWAFMPDQLLKVGLEHLQTSIDSDAYNVPTRNVDSGYIGYEGKFGPHQLQLNLRRDRYSDFGGA NSYYAGYGFAFNPQWKAVASVSNAFRAPSFNELYYPFFGNPNVQPEKARSVEGGVEYSGAIGLVRVTVFETDYSNLITAV CDADFNCSAANVNRARVNGLETSYRGSIYGVDLRASFTMQNPQDLSANQLLSRRARHFGSVSAYKTFGPFSAGVEWNAAG DRQDSTKTLGGYGLLNLVGRYQITPDWAVSARVENVTNKNYQLIYPYNTASRGVFFTLSWQQHEPKR
Sequences:
>Translated_627_residues MRALASARLGVVAGAMAGAVAPAWAQSNTQVASTPVGELNPTVVTASRSEQPLSDALPHTTVISRADIERSQAPDAVTLL RREAGIEIAQSGGPGTNASLFMRGAGSNQTLVLIDGVRVASGTSGGAQIAQLMADQIDHIEVVRGNVSALYGSDAIGGVV QIFTRNGRGHGPLANAEIEYGARNTKRAQAGISGSLGENGDTSFAVSVSEFKTNGFSTINPQQAPKANPNDNPYTNKSVS AQLSHRFSADWQAGLTYFQTWGDVSYDNAFGKPTDDNVAHNVVRSMSAYVDGKVTQDWKTRLTLSQGDDRSLNYTNGVLQ VPARFNTRNQTASWQNDWAFMPDQLLKVGLEHLQTSIDSDAYNVPTRNVDSGYIGYEGKFGPHQLQLNLRRDRYSDFGGA NSYYAGYGFAFNPQWKAVASVSNAFRAPSFNELYYPFFGNPNVQPEKARSVEGGVEYSGAIGLVRVTVFETDYSNLITAV CDADFNCSAANVNRARVNGLETSYRGSIYGVDLRASFTMQNPQDLSANQLLSRRARHFGSVSAYKTFGPFSAGVEWNAAG DRQDSTKTLGGYGLLNLVGRYQITPDWAVSARVENVTNKNYQLIYPYNTASRGVFFTLSWQQHEPKR >Mature_627_residues MRALASARLGVVAGAMAGAVAPAWAQSNTQVASTPVGELNPTVVTASRSEQPLSDALPHTTVISRADIERSQAPDAVTLL RREAGIEIAQSGGPGTNASLFMRGAGSNQTLVLIDGVRVASGTSGGAQIAQLMADQIDHIEVVRGNVSALYGSDAIGGVV QIFTRNGRGHGPLANAEIEYGARNTKRAQAGISGSLGENGDTSFAVSVSEFKTNGFSTINPQQAPKANPNDNPYTNKSVS AQLSHRFSADWQAGLTYFQTWGDVSYDNAFGKPTDDNVAHNVVRSMSAYVDGKVTQDWKTRLTLSQGDDRSLNYTNGVLQ VPARFNTRNQTASWQNDWAFMPDQLLKVGLEHLQTSIDSDAYNVPTRNVDSGYIGYEGKFGPHQLQLNLRRDRYSDFGGA NSYYAGYGFAFNPQWKAVASVSNAFRAPSFNELYYPFFGNPNVQPEKARSVEGGVEYSGAIGLVRVTVFETDYSNLITAV CDADFNCSAANVNRARVNGLETSYRGSIYGVDLRASFTMQNPQDLSANQLLSRRARHFGSVSAYKTFGPFSAGVEWNAAG DRQDSTKTLGGYGLLNLVGRYQITPDWAVSARVENVTNKNYQLIYPYNTASRGVFFTLSWQQHEPKR
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: COG4206
COG function: function code H; Outer membrane cobalamin receptor protein
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=626, Percent_Identity=27.1565495207668, Blast_Score=180, Evalue=3e-46, Organism=Escherichia coli, GI1788478, Length=159, Percent_Identity=36.4779874213836, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1786798, Length=186, Percent_Identity=33.8709677419355, Blast_Score=68, Evalue=2e-12,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 67865; Mature: 67865
Theoretical pI: Translated: 7.72; Mature: 7.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRALASARLGVVAGAMAGAVAPAWAQSNTQVASTPVGELNPTVVTASRSEQPLSDALPHT CCCHHHHHHHHHHHHHHHHCCCHHCCCCCEEECCCCCCCCCEEEEECCCCCCHHHCCCCC TVISRADIERSQAPDAVTLLRREAGIEIAQSGGPGTNASLFMRGAGSNQTLVLIDGVRVA EEEEHHHCHHHCCCCHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCCCEEEEEECEEEE SGTSGGAQIAQLMADQIDHIEVVRGNVSALYGSDAIGGVVQIFTRNGRGHGPLANAEIEY CCCCCHHHHHHHHHHHCCEEEEEECCEEEEECCCHHCCEEEEEECCCCCCCCCCCCEEEC GARNTKRAQAGISGSLGENGDTSFAVSVSEFKTNGFSTINPQQAPKANPNDNPYTNKSVS CCCCCHHHHCCCCCCCCCCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH AQLSHRFSADWQAGLTYFQTWGDVSYDNAFGKPTDDNVAHNVVRSMSAYVDGKVTQDWKT HHHHHHCCCCHHHCCHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEE RLTLSQGDDRSLNYTNGVLQVPARFNTRNQTASWQNDWAFMPDQLLKVGLEHLQTSIDSD EEEEECCCCCCCEECCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC AYNVPTRNVDSGYIGYEGKFGPHQLQLNLRRDRYSDFGGANSYYAGYGFAFNPQWKAVAS CCCCCCCCCCCCEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCHHHHHH VSNAFRAPSFNELYYPFFGNPNVQPEKARSVEGGVEYSGAIGLVRVTVFETDYSNLITAV HHHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCEECCCEEEEEEEEEECCHHHHHHHH CDADFNCSAANVNRARVNGLETSYRGSIYGVDLRASFTMQNPQDLSANQLLSRRARHFGS HCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHCC VSAYKTFGPFSAGVEWNAAGDRQDSTKTLGGYGLLNLVGRYQITPDWAVSARVENVTNKN CCCEEECCCCCCCEEECCCCCCCCCCHHCCCHHHHHHCCCEEECCCCEEEEEHHHCCCCC YQLIYPYNTASRGVFFTLSWQQHEPKR EEEEEECCCCCCCEEEEEEECCCCCCC >Mature Secondary Structure MRALASARLGVVAGAMAGAVAPAWAQSNTQVASTPVGELNPTVVTASRSEQPLSDALPHT CCCHHHHHHHHHHHHHHHHCCCHHCCCCCEEECCCCCCCCCEEEEECCCCCCHHHCCCCC TVISRADIERSQAPDAVTLLRREAGIEIAQSGGPGTNASLFMRGAGSNQTLVLIDGVRVA EEEEHHHCHHHCCCCHHHHHHHHCCCEEEECCCCCCCCEEEEEECCCCCEEEEEECEEEE SGTSGGAQIAQLMADQIDHIEVVRGNVSALYGSDAIGGVVQIFTRNGRGHGPLANAEIEY CCCCCHHHHHHHHHHHCCEEEEEECCEEEEECCCHHCCEEEEEECCCCCCCCCCCCEEEC GARNTKRAQAGISGSLGENGDTSFAVSVSEFKTNGFSTINPQQAPKANPNDNPYTNKSVS CCCCCHHHHCCCCCCCCCCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHH AQLSHRFSADWQAGLTYFQTWGDVSYDNAFGKPTDDNVAHNVVRSMSAYVDGKVTQDWKT HHHHHHCCCCHHHCCHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEE RLTLSQGDDRSLNYTNGVLQVPARFNTRNQTASWQNDWAFMPDQLLKVGLEHLQTSIDSD EEEEECCCCCCCEECCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC AYNVPTRNVDSGYIGYEGKFGPHQLQLNLRRDRYSDFGGANSYYAGYGFAFNPQWKAVAS CCCCCCCCCCCCEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCHHHHHH VSNAFRAPSFNELYYPFFGNPNVQPEKARSVEGGVEYSGAIGLVRVTVFETDYSNLITAV HHHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCEECCCEEEEEEEEEECCHHHHHHHH CDADFNCSAANVNRARVNGLETSYRGSIYGVDLRASFTMQNPQDLSANQLLSRRARHFGS HCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHCC VSAYKTFGPFSAGVEWNAAGDRQDSTKTLGGYGLLNLVGRYQITPDWAVSARVENVTNKN CCCEEECCCCCCCEEECCCCCCCCCCHHCCCHHHHHHCCCEEECCCCEEEEEHHHCCCCC YQLIYPYNTASRGVFFTLSWQQHEPKR EEEEEECCCCCCCEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA