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The map label for this gene is rarA [H]

Identifier: 187929625

GI number: 187929625

Start: 2658102

End: 2659409

Strand: Reverse

Name: rarA [H]

Synonym: Rpic_2552

Alternate gene names: 187929625

Gene position: 2659409-2658102 (Counterclockwise)

Preceding gene: 187929627

Following gene: 187929624

Centisome position: 67.45

GC content: 67.2

Gene sequence:

>1308_bases
ATGCCGCTGGCCGAGCGCCTCCGCCCCCATTCCGCCGACGATGTGATCGGCCAGCAGCATCTGCTGGGGCCGGGCAAGCC
GCTGCGCGTGGCCTTCGCCTCCGGCGAGCCGCATTCGATGATCCTCTGGGGCCCGCCCGGGGTGGGCAAGACCACGCTGG
CGCGGCTGATGGCCAACGCGTTTGACGCGGAATTCATCGCGCTGTCCGCCGTGCTGTCTGGCGTCAAGGACATCCGCGAG
GCCGTGGAGCGTGCGGAGCAGTTTCGTGCCCACGGCCGCCGCACCCTTGTGTTCGTCGACGAGGTCCATCGCTTCAACAA
AAGCCAGCAGGATGCCTTCCTGCCGCACGTGGAAAGCGGGCTGTTCACCTTCATCGGCGCGACGACGGAAAATCCCTCGT
TCGAGGTGAACGGCGCATTGCTCTCGCGTGCTGCGGTGTACGTGCTCAAGAGCCTGTCGGACGACGAGCTGAAGCAGCTT
GCCGAACGTGCACGTCAGGAGCTGGGCGGGCTGGAGTGGACGCCCGCCGCACTCGACGCCATCGTCGCGTCGGCCGACGG
CGATGGCCGCAAGCTGCTCAACAACATTGAAATTGTGGCCCGCGCCGCGCGCGCGCAAGCGGATGGCGATGCGGTGCCCG
CCGTTGACGAGGCGCTGCTGGCCTCTGCGCTGTCAGAAAATCTGCGCCGCTTCGACAAGGGCGGCGACGCCTTCTACGAC
CAGATCAGCGCGCTGCACAAGTCCGTACGCGGCTCCGACCCGGACGGCGCGCTGTACTGGTTCTGCCGCATGCTCGATGG
CGGCGCGGACCCGCGCTATCTTGCGCGCCGCATCGTACGCATGGCGTGGGAAGACATCGGCCTGGCGGACCCGCGCGCCG
GGCGCATCACGCTCGACGCCGCGGAAACGTACGAACGCCTGGGCTCGCCGGAAGGGGAGCTTGCGCTGGCCCAGGCGGTG
ATCTACCTGGCCATCGCGCCCAAGTCGAACGCCGGCTACAACGCCTACAACGCGGCGCGGGCCTTCGTCAGCCAGGACAA
GTCGCGCAACGTGCCCGTGCACCTGCGTAATGCGCCGACCAAGCTGATGAAAGAACTCGGCTACGGCCATGCCTACCGTT
ACGCGCATGACGAGCCCGAGGCCTACGCCGCTGGCGAAACCTACTTTCCCGACGATCTGCCCGCGCAGAACTGGTACGTG
CCGACGCCGCGCGGCCTGGAAGGCAAGATTGGCGAGAAGCTGCGGCACCTGCGCGAGCTGGATGCGCAGTGGCATGCCGA
GCAGGACAAATCCTCCCGCAACAAATAA

Upstream 100 bases:

>100_bases
CGCTGCCTGACGTTGCCGTGGGAACCGGCCGGCGGGCGGATTCTGCGACAATCCCCGCATGAACGCTTCCGCATCTCTCT
TCCCGGACGCGCCCGCCCAC

Downstream 100 bases:

>100_bases
TCCCTACGGGCCGGTACGATAAAATCGGTCTTTTCGGTCATTCAGATCGCTCGCAATCTTCGCTTTCCTTTTTCTCCACC
ATGCTTGATATCCAACTGCT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MPLAERLRPHSADDVIGQQHLLGPGKPLRVAFASGEPHSMILWGPPGVGKTTLARLMANAFDAEFIALSAVLSGVKDIRE
AVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAVYVLKSLSDDELKQL
AERARQELGGLEWTPAALDAIVASADGDGRKLLNNIEIVARAARAQADGDAVPAVDEALLASALSENLRRFDKGGDAFYD
QISALHKSVRGSDPDGALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPRAGRITLDAAETYERLGSPEGELALAQAV
IYLAIAPKSNAGYNAYNAARAFVSQDKSRNVPVHLRNAPTKLMKELGYGHAYRYAHDEPEAYAAGETYFPDDLPAQNWYV
PTPRGLEGKIGEKLRHLRELDAQWHAEQDKSSRNK

Sequences:

>Translated_435_residues
MPLAERLRPHSADDVIGQQHLLGPGKPLRVAFASGEPHSMILWGPPGVGKTTLARLMANAFDAEFIALSAVLSGVKDIRE
AVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAVYVLKSLSDDELKQL
AERARQELGGLEWTPAALDAIVASADGDGRKLLNNIEIVARAARAQADGDAVPAVDEALLASALSENLRRFDKGGDAFYD
QISALHKSVRGSDPDGALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPRAGRITLDAAETYERLGSPEGELALAQAV
IYLAIAPKSNAGYNAYNAARAFVSQDKSRNVPVHLRNAPTKLMKELGYGHAYRYAHDEPEAYAAGETYFPDDLPAQNWYV
PTPRGLEGKIGEKLRHLRELDAQWHAEQDKSSRNK
>Mature_434_residues
PLAERLRPHSADDVIGQQHLLGPGKPLRVAFASGEPHSMILWGPPGVGKTTLARLMANAFDAEFIALSAVLSGVKDIREA
VERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNGALLSRAAVYVLKSLSDDELKQLA
ERARQELGGLEWTPAALDAIVASADGDGRKLLNNIEIVARAARAQADGDAVPAVDEALLASALSENLRRFDKGGDAFYDQ
ISALHKSVRGSDPDGALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPRAGRITLDAAETYERLGSPEGELALAQAVI
YLAIAPKSNAGYNAYNAARAFVSQDKSRNVPVHLRNAPTKLMKELGYGHAYRYAHDEPEAYAAGETYFPDDLPAQNWYVP
TPRGLEGKIGEKLRHLRELDAQWHAEQDKSSRNK

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=439, Percent_Identity=41.002277904328, Blast_Score=311, Evalue=5e-85,
Organism=Homo sapiens, GI18426904, Length=439, Percent_Identity=36.6742596810934, Blast_Score=255, Evalue=5e-68,
Organism=Escherichia coli, GI1787119, Length=437, Percent_Identity=55.8352402745995, Blast_Score=463, Evalue=1e-132,
Organism=Escherichia coli, GI1786676, Length=245, Percent_Identity=26.530612244898, Blast_Score=65, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6324111, Length=445, Percent_Identity=38.876404494382, Blast_Score=301, Evalue=1e-82,
Organism=Saccharomyces cerevisiae, GI6324478, Length=253, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI17647857, Length=220, Percent_Identity=30.4545454545455, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 47747; Mature: 47616

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLAERLRPHSADDVIGQQHLLGPGKPLRVAFASGEPHSMILWGPPGVGKTTLARLMANA
CCCHHHCCCCCCHHHHCHHHCCCCCCCEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHH
FDAEFIALSAVLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVESG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCHHCCCHHHCC
LFTFIGATTENPSFEVNGALLSRAAVYVLKSLSDDELKQLAERARQELGGLEWTPAALDA
CEEEEECCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
IVASADGDGRKLLNNIEIVARAARAQADGDAVPAVDEALLASALSENLRRFDKGGDAFYD
HHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
QISALHKSVRGSDPDGALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPRAGRITLDA
HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECH
AETYERLGSPEGELALAQAVIYLAIAPKSNAGYNAYNAARAFVSQDKSRNVPVHLRNAPT
HHHHHHHCCCCCHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCHH
KLMKELGYGHAYRYAHDEPEAYAAGETYFPDDLPAQNWYVPTPRGLEGKIGEKLRHLREL
HHHHHCCCCCEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
DAQWHAEQDKSSRNK
HHHHCCHHHHHCCCC
>Mature Secondary Structure 
PLAERLRPHSADDVIGQQHLLGPGKPLRVAFASGEPHSMILWGPPGVGKTTLARLMANA
CCHHHCCCCCCHHHHCHHHCCCCCCCEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHH
FDAEFIALSAVLSGVKDIREAVERAEQFRAHGRRTLVFVDEVHRFNKSQQDAFLPHVESG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCHHCCCHHHCC
LFTFIGATTENPSFEVNGALLSRAAVYVLKSLSDDELKQLAERARQELGGLEWTPAALDA
CEEEEECCCCCCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
IVASADGDGRKLLNNIEIVARAARAQADGDAVPAVDEALLASALSENLRRFDKGGDAFYD
HHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
QISALHKSVRGSDPDGALYWFCRMLDGGADPRYLARRIVRMAWEDIGLADPRAGRITLDA
HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECH
AETYERLGSPEGELALAQAVIYLAIAPKSNAGYNAYNAARAFVSQDKSRNVPVHLRNAPT
HHHHHHHCCCCCHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCHH
KLMKELGYGHAYRYAHDEPEAYAAGETYFPDDLPAQNWYVPTPRGLEGKIGEKLRHLREL
HHHHHCCCCCEECCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
DAQWHAEQDKSSRNK
HHHHCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]