| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
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The map label for this gene is 187929374
Identifier: 187929374
GI number: 187929374
Start: 2415748
End: 2417184
Strand: Reverse
Name: 187929374
Synonym: Rpic_2295
Alternate gene names: NA
Gene position: 2417184-2415748 (Counterclockwise)
Preceding gene: 187929375
Following gene: 187929373
Centisome position: 61.31
GC content: 57.55
Gene sequence:
>1437_bases ATGACGCGTCTGACGCTTGAAGGGGGCTTTTATCTCGCCCGGAGCCTGATCGCGGATGCGCAGCGCTGCGTGAATCTGAT TCCTGAGCGCAACTCTCGTGAATCCGAAGTCAGCACCACGCACTATCCGACGCCAGGCAAGACACTGCTGGCTACGGTGG GAACCGGCCCAATTAGAGGGGCCTATGCCGCAACCAACGGGATCCTTTACGTCGCCAGCGGGAGTTCCCTCTACATGGTC TCGTCGTCGTGGATCACGACGGCGGTATCTGCTCTCACAACATCGTCTGGTCCGGTGTCCATGAAGGACAACGGAACATC CATGATTGTTGCCGATGGCTCGCAAACGGGCGTCAGAGTAAAACTGGCGACCAACATCGCGACGTTCATCACGTCGACCT CAGACGCCAACTGGCGCGGCGCCGATCGAGTGGACTATGCCGATGGCTATTTTGTATGCAACGTCCCTGGAGCGCGACAG TGGTTTATTTCTGACGTGCAGGCGGACACCTTCAGCAACCCTTTGTATTTCGCCTCGAAAGAAGGGAATGCTGACCTGCT GCAGGTCGCACCAGTTGTGCACCGTGAGATCTGGTTGATCGGAACGGACACCACCGAGGTCTACTTCAACACTGGAGACG TCTCGTTTCCGTACCAGCGCATGCCTGGCGTGTTCATCCAGCACGGATGTGCGGCCAAGGGATCAGTCGCAACCTGGGAC CTCTCTCTGTTTTGGCTGGGACGTGATCCGCAGGGCCAGTTTGTGGTCTTTCGCGGGGGAAGCTATCAGGCACAGCGCAT CTCTACGCACGCGATCGAAGAACAGATCAGCGGCTACGGCACGGTATCAGATGCGATCGGCTATTGCTACCAACAGGAAG GGCACCCGTTTTATGTGCTGACATTCCCCACAGCGGATGCGACGTGGGTTTTCGACATTGGGAACGGCCTTTGGCATGAA CGAGCGTCGATGGATGGCGCGGGCATGCTTCACCGCGATATCAGCAATTGCCAAGCGGTTGCCTACGGTGTGAATGTCGT TGGCGACTATCAGAACGGGAATCTATACAAGCTCGATCAGTCGACCTTCACCGACAACGGTAATGCCGTTCCGCGTATCC GCAGTTTCCCGACGCTGGATATCGAAGACAAACGAGTCATCTATGAAAAGCTGACCCTAGATTTCCAGACTGGTATTGGC CAGGCGACTGGCACTTGGCAGAACCCCATGGTGGATGTTCGCTGGTCAGATGACGGCGGCTATACCTGGGGGAACAAGGT ACAGGTGCCGGTGGGGGCGATTGGACGATTCAGCACGCGGGCCACTCTCTGGCGCATGGGCATGGGGCGCCGTCGGGTCT ATGAGGTGTCTTGGGCTTGGCCGATGGATACCGCTCTCAACGGGGCTTGGCTCGATATTCGGGTCGGGAAAAGCTGA
Upstream 100 bases:
>100_bases AGCGCAGCATGGAGCGCGCGAATATCCAGATCCCGATGCTGCAGATGCCGCGCGATCTGCTCCGTCGTGGCCACTACAAC GTGTTTTCCGACCGTCTGAC
Downstream 100 bases:
>100_bases TGGCGAGCAATACATTCACGCTTCTGGATATCGCAGTTCCGTTTGTCGATATACATACCGGCCAACTGAATCCAGTATGG TACCGCTTCTTGATGAATCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 478; Mature: 477
Protein sequence:
>478_residues MTRLTLEGGFYLARSLIADAQRCVNLIPERNSRESEVSTTHYPTPGKTLLATVGTGPIRGAYAATNGILYVASGSSLYMV SSSWITTAVSALTTSSGPVSMKDNGTSMIVADGSQTGVRVKLATNIATFITSTSDANWRGADRVDYADGYFVCNVPGARQ WFISDVQADTFSNPLYFASKEGNADLLQVAPVVHREIWLIGTDTTEVYFNTGDVSFPYQRMPGVFIQHGCAAKGSVATWD LSLFWLGRDPQGQFVVFRGGSYQAQRISTHAIEEQISGYGTVSDAIGYCYQQEGHPFYVLTFPTADATWVFDIGNGLWHE RASMDGAGMLHRDISNCQAVAYGVNVVGDYQNGNLYKLDQSTFTDNGNAVPRIRSFPTLDIEDKRVIYEKLTLDFQTGIG QATGTWQNPMVDVRWSDDGGYTWGNKVQVPVGAIGRFSTRATLWRMGMGRRRVYEVSWAWPMDTALNGAWLDIRVGKS
Sequences:
>Translated_478_residues MTRLTLEGGFYLARSLIADAQRCVNLIPERNSRESEVSTTHYPTPGKTLLATVGTGPIRGAYAATNGILYVASGSSLYMV SSSWITTAVSALTTSSGPVSMKDNGTSMIVADGSQTGVRVKLATNIATFITSTSDANWRGADRVDYADGYFVCNVPGARQ WFISDVQADTFSNPLYFASKEGNADLLQVAPVVHREIWLIGTDTTEVYFNTGDVSFPYQRMPGVFIQHGCAAKGSVATWD LSLFWLGRDPQGQFVVFRGGSYQAQRISTHAIEEQISGYGTVSDAIGYCYQQEGHPFYVLTFPTADATWVFDIGNGLWHE RASMDGAGMLHRDISNCQAVAYGVNVVGDYQNGNLYKLDQSTFTDNGNAVPRIRSFPTLDIEDKRVIYEKLTLDFQTGIG QATGTWQNPMVDVRWSDDGGYTWGNKVQVPVGAIGRFSTRATLWRMGMGRRRVYEVSWAWPMDTALNGAWLDIRVGKS >Mature_477_residues TRLTLEGGFYLARSLIADAQRCVNLIPERNSRESEVSTTHYPTPGKTLLATVGTGPIRGAYAATNGILYVASGSSLYMVS SSWITTAVSALTTSSGPVSMKDNGTSMIVADGSQTGVRVKLATNIATFITSTSDANWRGADRVDYADGYFVCNVPGARQW FISDVQADTFSNPLYFASKEGNADLLQVAPVVHREIWLIGTDTTEVYFNTGDVSFPYQRMPGVFIQHGCAAKGSVATWDL SLFWLGRDPQGQFVVFRGGSYQAQRISTHAIEEQISGYGTVSDAIGYCYQQEGHPFYVLTFPTADATWVFDIGNGLWHER ASMDGAGMLHRDISNCQAVAYGVNVVGDYQNGNLYKLDQSTFTDNGNAVPRIRSFPTLDIEDKRVIYEKLTLDFQTGIGQ ATGTWQNPMVDVRWSDDGGYTWGNKVQVPVGAIGRFSTRATLWRMGMGRRRVYEVSWAWPMDTALNGAWLDIRVGKS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52471; Mature: 52340
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRLTLEGGFYLARSLIADAQRCVNLIPERNSRESEVSTTHYPTPGKTLLATVGTGPIRG CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC AYAATNGILYVASGSSLYMVSSSWITTAVSALTTSSGPVSMKDNGTSMIVADGSQTGVRV CEEECCCEEEEECCCEEEEEECCHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCCCEEE KLATNIATFITSTSDANWRGADRVDYADGYFVCNVPGARQWFISDVQADTFSNPLYFASK EEECCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEC EGNADLLQVAPVVHREIWLIGTDTTEVYFNTGDVSFPYQRMPGVFIQHGCAAKGSVATWD CCCCCEEEECCEEEEEEEEEECCCEEEEEECCCCCCCHHHCCCEEEECCCCCCCCEEEEE LSLFWLGRDPQGQFVVFRGGSYQAQRISTHAIEEQISGYGTVSDAIGYCYQQEGHPFYVL EEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHEECCCCEEEEE TFPTADATWVFDIGNGLWHERASMDGAGMLHRDISNCQAVAYGVNVVGDYQNGNLYKLDQ EECCCCEEEEEECCCCCCHHHCCCCCCCHHHHHHHCCEEEEEEEEEEEECCCCCEEEECC STFTDNGNAVPRIRSFPTLDIEDKRVIYEKLTLDFQTGIGQATGTWQNPMVDVRWSDDGG CEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCC YTWGNKVQVPVGAIGRFSTRATLWRMGMGRRRVYEVSWAWPMDTALNGAWLDIRVGKS EECCCEEEECCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCC >Mature Secondary Structure TRLTLEGGFYLARSLIADAQRCVNLIPERNSRESEVSTTHYPTPGKTLLATVGTGPIRG EEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC AYAATNGILYVASGSSLYMVSSSWITTAVSALTTSSGPVSMKDNGTSMIVADGSQTGVRV CEEECCCEEEEECCCEEEEEECCHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCCCEEE KLATNIATFITSTSDANWRGADRVDYADGYFVCNVPGARQWFISDVQADTFSNPLYFASK EEECCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEC EGNADLLQVAPVVHREIWLIGTDTTEVYFNTGDVSFPYQRMPGVFIQHGCAAKGSVATWD CCCCCEEEECCEEEEEEEEEECCCEEEEEECCCCCCCHHHCCCEEEECCCCCCCCEEEEE LSLFWLGRDPQGQFVVFRGGSYQAQRISTHAIEEQISGYGTVSDAIGYCYQQEGHPFYVL EEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHEECCCCEEEEE TFPTADATWVFDIGNGLWHERASMDGAGMLHRDISNCQAVAYGVNVVGDYQNGNLYKLDQ EECCCCEEEEEECCCCCCHHHCCCCCCCHHHHHHHCCEEEEEEEEEEEECCCCCEEEECC STFTDNGNAVPRIRSFPTLDIEDKRVIYEKLTLDFQTGIGQATGTWQNPMVDVRWSDDGG CEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCC YTWGNKVQVPVGAIGRFSTRATLWRMGMGRRRVYEVSWAWPMDTALNGAWLDIRVGKS EECCCEEEECCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA