| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
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The map label for this gene is flgJ [C]
Identifier: 187929367
GI number: 187929367
Start: 2408564
End: 2411227
Strand: Reverse
Name: flgJ [C]
Synonym: Rpic_2288
Alternate gene names: 187929367
Gene position: 2411227-2408564 (Counterclockwise)
Preceding gene: 187929368
Following gene: 187929365
Centisome position: 61.16
GC content: 58.56
Gene sequence:
>2664_bases ATGAGCGACATCAAGAAGTTCATCCAGGACAACCTGGCAGCAGCTCAGGCTGTATCAGACAAGATCGGCGTTGATCCGTC CGTCATTCTTGGCCAGTGGGGTCTGGAGACTGGCTGGGGCAAGTCTGTCGTGCCTGGGACGAACAACTTGGGGAACATCA AGGGCCCAGGCGTTGCCGCCACTGACAACGTCACGGGTTCTACCGATCAGTACCGCGCATACCAGAATCCACAGCAGTTC AGCTCCGACTTCTCGAACCTCATTGCGAACAAGTTTCCCGGTGCGGTCGGCGCTGGTCCTGATGCCGGCGCTTATGCGAA AGCGCTGAAGCCGGGACAGAAGGGCGGCTACGCCGAAGATACCAACTACGGCAGCAAGCTCGCCGACGCAACCCAGAGTG TTCGGGAAGCGCGCGGCATCGATATCGATCCGTCGAAGATCTCTTGGGACAACGGTCCAAATGCCAAGACGGTGCCGTCC ATTTCCTCTGGTATCGATCCATCGAAGGTGCGATGGGATGCGACCCCGTCGACGGCACCAGATCAGATAGAGCGCCACGC CGGCGCGGCCGCTTCCCAGCCATCAGCCAACCCAGCTCAGCCGCAGCCCTCCCTAGTAGACAGTGCCATGGCCGTTCCGG CCGGCATCTACCGGGGCTTTCAGGGTGTCACGGATTCTGGCGTACAGGGTGCCGCATGGTTGCTCGACAAGCTAGCCGGA ACGAACTACAAGCCAAGCATTGATGCGATCGTCAACCAGCACAACGCTGACTTCAATGCGAAGTATGGCGGAGAGAATGT CGCCAGCCGTGTCGCCCAGAACTCCAATGTCGCAGGCAGCTTGGCTGCTACTGCGCCGCTTTTATCCCTCAAGGCGGTCC AGGGCACAAACACACTGGCAAACGCGATCAACGGTGCAATCCAAGGCGGTCTAGCCGGTGCTGCGACCTCAAGCCAGAGT GATGCTCCTCTGGTCAATCAAGTAGCTTCAGGTGCAGCGCTGGGGGGTGTCGGGAACGTGTTGTTACCCAAGATCGGACG TGTTGCATCGGATGCAATTGATGCGATCGGCAATGGAGTGAACTCTCTGGCCGAAAAGCTGGGTTACGTGCGCGCCAATC CGAATCCGTTTCCCGGAGGCGTTCCTTTTGGCAACGCTTCAACTCAGGGCGCCGCTGCGGTCAGTGCTGCTGATAAGCCG AAATATGTCCCAAATGGCGATGGCACGTTCCGCCAAGTCAGCCCCGCAGCAACCTCGGCTGCAACCTCGAGCACTTCGCA AGGAACGGCCCAGGCGCCGGTCACCGTTCCCAAGTTCGAGGCTCCGGACATTCCCAAGCCGAAGACGAGTCTTTCTGTTC TTGAACAGCAGGCAAACATCGACACGATGCGCGAACTGGGCCTCACGAGCCAACGGCAAAGCGCGATTACTGGCGACAAG TTCACAGCCGGCCAAGAATTCCAGCACGCGAAGTTGGATAGCCCCATGGGCGAGGCTATGCGAGAGCAATTGGCTAACGA GCAAGGCGCGCTCAAGAAATATGCAAGCCAGATCGTTTCTGATACTGGCGCGACTTCCACGTCACCAGAGGGGATTGGGC AAAACGTACGGGCACCTCTACAGGCTCTGTCGGAGCACTACGACAACCGTGTGCGTGGTCTGTATCAAGCGGCCGATCAG CGCGCACAAGGCGCTGCAGACGTCAATCCAGCGGGCTTCGGAAAGCTCATGGATACGGATTCCGTGTTTGCTGGCAAGGC TGAGAACACAGCCCTACGCCGCGGCATTCGCGCCTACATGAAAGAGCAGGGCATTGTCGGGGACGATGGCAACATCCAGC CGATTTCGGCGCAGCAAGCCGAGGGAATGCGCCAATACCTAAACAGCCAATGGTCCCCCCAGAACTCTGGTTTGATCGGC AAAATCAAGGAATCGCTAGACATGGACGTGGCCAAGGCTGGCGGCGACGATATCTATGCCCAAGCCCGCGCTTTGCATGC TGAACGCAAGAATACGCTCGATAACCCAAAAGGTATCTCCTCTCTAATCAGCGAATCGGGCCCAGATGGCATTAATAAGG CAGTGCCGGACGAGAAGATCGGCGCGAAGCTGACGAGCATGCCGACGGCTCAGTTTTCGCATGTCATCGATACGCTTAGG AATCTACCGGACGAGCTGCAGCCGCAAGGGCAACAAGCGCTCGCCGAGATCAAGGGTCAGTTGGCACGGCAGATCTACGC CGCTGGTGACCGCGGGGGTACACAAAACGGGCCGTCCATGTGGAATGCGTCGAACGTGACCCGCGAGCTCAACAACCAGG CGTCGAAGATGGCGCTAGTGTTCAGCCCCGAGGAAATCTCGAAGTTCGAGACCTTGAACCGCGGCGGCCACATCCTACAA ACACCTTCCGCATATCCTGGGGCTGCCGTTCAAGGCCACAACATCTTGCAGCGCGGGATGATTTGGGCTCCTGCCGCAAT TGGTTCAGGTCTTGGCGGGGCGATTGGTCATGCGATTGGCGGCTATCCAGGCATGGTTGCGGGAACGGCGGCCGGTTCAA CCTTTGGTTCTTCTGCAGCCACGAAGATGGCCACGAGGATTGATGCAGCCAATGCAAACAAGCTGCGCGCACTAATGGGC AACCCGAAACCGGTCACGAAGTGA
Upstream 100 bases:
>100_bases CGACGATGCGGGCCTTTACGGGCCAGATCAAACCGGTCAAAACCGGCACCTATAACGGCCGTAAGGTCGTGCAGTACTCT GACGGTTCTGTCGACTACCA
Downstream 100 bases:
>100_bases TGGCGCTCACGATGAGCGCCCAGATCATCATTTTTCCGAATTTTGGGTATTTCTTTTTGCGGGCCTCGAGGACTGCAAGG CCTTCGCGCAGCTTTTCTTC
Product: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 887; Mature: 886
Protein sequence:
>887_residues MSDIKKFIQDNLAAAQAVSDKIGVDPSVILGQWGLETGWGKSVVPGTNNLGNIKGPGVAATDNVTGSTDQYRAYQNPQQF SSDFSNLIANKFPGAVGAGPDAGAYAKALKPGQKGGYAEDTNYGSKLADATQSVREARGIDIDPSKISWDNGPNAKTVPS ISSGIDPSKVRWDATPSTAPDQIERHAGAAASQPSANPAQPQPSLVDSAMAVPAGIYRGFQGVTDSGVQGAAWLLDKLAG TNYKPSIDAIVNQHNADFNAKYGGENVASRVAQNSNVAGSLAATAPLLSLKAVQGTNTLANAINGAIQGGLAGAATSSQS DAPLVNQVASGAALGGVGNVLLPKIGRVASDAIDAIGNGVNSLAEKLGYVRANPNPFPGGVPFGNASTQGAAAVSAADKP KYVPNGDGTFRQVSPAATSAATSSTSQGTAQAPVTVPKFEAPDIPKPKTSLSVLEQQANIDTMRELGLTSQRQSAITGDK FTAGQEFQHAKLDSPMGEAMREQLANEQGALKKYASQIVSDTGATSTSPEGIGQNVRAPLQALSEHYDNRVRGLYQAADQ RAQGAADVNPAGFGKLMDTDSVFAGKAENTALRRGIRAYMKEQGIVGDDGNIQPISAQQAEGMRQYLNSQWSPQNSGLIG KIKESLDMDVAKAGGDDIYAQARALHAERKNTLDNPKGISSLISESGPDGINKAVPDEKIGAKLTSMPTAQFSHVIDTLR NLPDELQPQGQQALAEIKGQLARQIYAAGDRGGTQNGPSMWNASNVTRELNNQASKMALVFSPEEISKFETLNRGGHILQ TPSAYPGAAVQGHNILQRGMIWAPAAIGSGLGGAIGHAIGGYPGMVAGTAAGSTFGSSAATKMATRIDAANANKLRALMG NPKPVTK
Sequences:
>Translated_887_residues MSDIKKFIQDNLAAAQAVSDKIGVDPSVILGQWGLETGWGKSVVPGTNNLGNIKGPGVAATDNVTGSTDQYRAYQNPQQF SSDFSNLIANKFPGAVGAGPDAGAYAKALKPGQKGGYAEDTNYGSKLADATQSVREARGIDIDPSKISWDNGPNAKTVPS ISSGIDPSKVRWDATPSTAPDQIERHAGAAASQPSANPAQPQPSLVDSAMAVPAGIYRGFQGVTDSGVQGAAWLLDKLAG TNYKPSIDAIVNQHNADFNAKYGGENVASRVAQNSNVAGSLAATAPLLSLKAVQGTNTLANAINGAIQGGLAGAATSSQS DAPLVNQVASGAALGGVGNVLLPKIGRVASDAIDAIGNGVNSLAEKLGYVRANPNPFPGGVPFGNASTQGAAAVSAADKP KYVPNGDGTFRQVSPAATSAATSSTSQGTAQAPVTVPKFEAPDIPKPKTSLSVLEQQANIDTMRELGLTSQRQSAITGDK FTAGQEFQHAKLDSPMGEAMREQLANEQGALKKYASQIVSDTGATSTSPEGIGQNVRAPLQALSEHYDNRVRGLYQAADQ RAQGAADVNPAGFGKLMDTDSVFAGKAENTALRRGIRAYMKEQGIVGDDGNIQPISAQQAEGMRQYLNSQWSPQNSGLIG KIKESLDMDVAKAGGDDIYAQARALHAERKNTLDNPKGISSLISESGPDGINKAVPDEKIGAKLTSMPTAQFSHVIDTLR NLPDELQPQGQQALAEIKGQLARQIYAAGDRGGTQNGPSMWNASNVTRELNNQASKMALVFSPEEISKFETLNRGGHILQ TPSAYPGAAVQGHNILQRGMIWAPAAIGSGLGGAIGHAIGGYPGMVAGTAAGSTFGSSAATKMATRIDAANANKLRALMG NPKPVTK >Mature_886_residues SDIKKFIQDNLAAAQAVSDKIGVDPSVILGQWGLETGWGKSVVPGTNNLGNIKGPGVAATDNVTGSTDQYRAYQNPQQFS SDFSNLIANKFPGAVGAGPDAGAYAKALKPGQKGGYAEDTNYGSKLADATQSVREARGIDIDPSKISWDNGPNAKTVPSI SSGIDPSKVRWDATPSTAPDQIERHAGAAASQPSANPAQPQPSLVDSAMAVPAGIYRGFQGVTDSGVQGAAWLLDKLAGT NYKPSIDAIVNQHNADFNAKYGGENVASRVAQNSNVAGSLAATAPLLSLKAVQGTNTLANAINGAIQGGLAGAATSSQSD APLVNQVASGAALGGVGNVLLPKIGRVASDAIDAIGNGVNSLAEKLGYVRANPNPFPGGVPFGNASTQGAAAVSAADKPK YVPNGDGTFRQVSPAATSAATSSTSQGTAQAPVTVPKFEAPDIPKPKTSLSVLEQQANIDTMRELGLTSQRQSAITGDKF TAGQEFQHAKLDSPMGEAMREQLANEQGALKKYASQIVSDTGATSTSPEGIGQNVRAPLQALSEHYDNRVRGLYQAADQR AQGAADVNPAGFGKLMDTDSVFAGKAENTALRRGIRAYMKEQGIVGDDGNIQPISAQQAEGMRQYLNSQWSPQNSGLIGK IKESLDMDVAKAGGDDIYAQARALHAERKNTLDNPKGISSLISESGPDGINKAVPDEKIGAKLTSMPTAQFSHVIDTLRN LPDELQPQGQQALAEIKGQLARQIYAAGDRGGTQNGPSMWNASNVTRELNNQASKMALVFSPEEISKFETLNRGGHILQT PSAYPGAAVQGHNILQRGMIWAPAAIGSGLGGAIGHAIGGYPGMVAGTAAGSTFGSSAATKMATRIDAANANKLRALMGN PKPVTK
Specific function: Flagellum-Specific Muramidase Which Hydrolyzes The Peptidoglycan Layer To Assemble The Rod Structure In The Periplasmic Space (By Similarity). [C]
COG id: COG1705
COG function: function code NU; Muramidase (flagellum-specific)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.2.1.- [C]
Molecular weight: Translated: 91531; Mature: 91399
Theoretical pI: Translated: 7.91; Mature: 7.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDIKKFIQDNLAAAQAVSDKIGVDPSVILGQWGLETGWGKSVVPGTNNLGNIKGPGVAA CHHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC TDNVTGSTDQYRAYQNPQQFSSDFSNLIANKFPGAVGAGPDAGAYAKALKPGQKGGYAED CCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCC TNYGSKLADATQSVREARGIDIDPSKISWDNGPNAKTVPSISSGIDPSKVRWDATPSTAP CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCEEECCCCCCCH DQIERHAGAAASQPSANPAQPQPSLVDSAMAVPAGIYRGFQGVTDSGVQGAAWLLDKLAG HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC TNYKPSIDAIVNQHNADFNAKYGGENVASRVAQNSNVAGSLAATAPLLSLKAVQGTNTLA CCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHH NAINGAIQGGLAGAATSSQSDAPLVNQVASGAALGGVGNVLLPKIGRVASDAIDAIGNGV HHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCH NSLAEKLGYVRANPNPFPGGVPFGNASTQGAAAVSAADKPKYVPNGDGTFRQVSPAATSA HHHHHHHCEEECCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCEECCCHHHHH ATSSTSQGTAQAPVTVPKFEAPDIPKPKTSLSVLEQQANIDTMRELGLTSQRQSAITGDK HCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCHHHHHHCCCCC FTAGQEFQHAKLDSPMGEAMREQLANEQGALKKYASQIVSDTGATSTSPEGIGQNVRAPL CCCCCCHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHH QALSEHYDNRVRGLYQAADQRAQGAADVNPAGFGKLMDTDSVFAGKAENTALRRGIRAYM HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHH KEQGIVGDDGNIQPISAQQAEGMRQYLNSQWSPQNSGLIGKIKESLDMDVAKAGGDDIYA HHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH QARALHAERKNTLDNPKGISSLISESGPDGINKAVPDEKIGAKLTSMPTAQFSHVIDTLR HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHCCCHHHHHHHHHHHH NLPDELQPQGQQALAEIKGQLARQIYAAGDRGGTQNGPSMWNASNVTRELNNQASKMALV CCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCEEEE FSPEEISKFETLNRGGHILQTPSAYPGAAVQGHNILQRGMIWAPAAIGSGLGGAIGHAIG ECHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHCCEECCHHHCCCCCHHHHHHHC GYPGMVAGTAAGSTFGSSAATKMATRIDAANANKLRALMGNPKPVTK CCCCHHECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCC >Mature Secondary Structure SDIKKFIQDNLAAAQAVSDKIGVDPSVILGQWGLETGWGKSVVPGTNNLGNIKGPGVAA HHHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC TDNVTGSTDQYRAYQNPQQFSSDFSNLIANKFPGAVGAGPDAGAYAKALKPGQKGGYAED CCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCC TNYGSKLADATQSVREARGIDIDPSKISWDNGPNAKTVPSISSGIDPSKVRWDATPSTAP CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCEEECCCCCCCH DQIERHAGAAASQPSANPAQPQPSLVDSAMAVPAGIYRGFQGVTDSGVQGAAWLLDKLAG HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC TNYKPSIDAIVNQHNADFNAKYGGENVASRVAQNSNVAGSLAATAPLLSLKAVQGTNTLA CCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHH NAINGAIQGGLAGAATSSQSDAPLVNQVASGAALGGVGNVLLPKIGRVASDAIDAIGNGV HHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCH NSLAEKLGYVRANPNPFPGGVPFGNASTQGAAAVSAADKPKYVPNGDGTFRQVSPAATSA HHHHHHHCEEECCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCEECCCHHHHH ATSSTSQGTAQAPVTVPKFEAPDIPKPKTSLSVLEQQANIDTMRELGLTSQRQSAITGDK HCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCHHHHHHCCCCC FTAGQEFQHAKLDSPMGEAMREQLANEQGALKKYASQIVSDTGATSTSPEGIGQNVRAPL CCCCCCHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHH QALSEHYDNRVRGLYQAADQRAQGAADVNPAGFGKLMDTDSVFAGKAENTALRRGIRAYM HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHH KEQGIVGDDGNIQPISAQQAEGMRQYLNSQWSPQNSGLIGKIKESLDMDVAKAGGDDIYA HHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH QARALHAERKNTLDNPKGISSLISESGPDGINKAVPDEKIGAKLTSMPTAQFSHVIDTLR HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCHHHCCHHHCCCHHHHHHHHHHHH NLPDELQPQGQQALAEIKGQLARQIYAAGDRGGTQNGPSMWNASNVTRELNNQASKMALV CCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCEEEE FSPEEISKFETLNRGGHILQTPSAYPGAAVQGHNILQRGMIWAPAAIGSGLGGAIGHAIG ECHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHCCEECCHHHCCCCCHHHHHHHC GYPGMVAGTAAGSTFGSSAATKMATRIDAANANKLRALMGNPKPVTK CCCCHHECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA