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The map label for this gene is psd

Identifier: 187929304

GI number: 187929304

Start: 2336153

End: 2336800

Strand: Reverse

Name: psd

Synonym: Rpic_2225

Alternate gene names: 187929304

Gene position: 2336800-2336153 (Counterclockwise)

Preceding gene: 187929305

Following gene: 187929303

Centisome position: 59.27

GC content: 62.19

Gene sequence:

>648_bases
TTGAACAACACGTATCCGCATCCCATCATCGCCCGCGAGGGTTGGCCGTACCTGGGCGGGATTTTCATCGTCACGCTCAT
TGTGCAGGCTGCCGCCGGCTTTGGCTGGGCATGGCCGTTCTGGGTGCTGACGCTGTTTGTGCTGCAGTTTTTCCGCGATC
CCGCGCGCGCTGTGCCAACGCAGGCCAATGCGATTTTGTCGCCGGCCGATGGTCGCATCGTCGCCGTCGAGCAGGTGCGC
GACCCGTACGCTGATCGCGACTCGCTGAAGATCAGCGTGTTCATGAACGTGTTCAATGTGCACTCGAACCGCGCGCCGGT
CGATGGCACGGTGCAGCAGGTGCAGTACTTCCCGGGCAAGTTCGTCAATGCGGACCTGGATAAGGCGTCGCTGGAAAACG
AGCGCAACGCCATCGTGCTGCGCCGCGCTGATGGTCAGCTCGTCACTTCAGTGCAGGTGGCAGGATTGATCGCGCGGCGC
ATCCTTTGCTATACCAAGGCAGGCGAAGTACTCACGCGTGGCCAGCGCTACGGTTTCATCCGCTTTGGCTCGCGCGTTGA
CGTGTACCTGCCGCTGACGGCGCGTCCACGCGTGACCATCGGCGAGAAGGTATCCGCCACGCTTACGGTGCTTGCTGAGC
TGGACTGA

Upstream 100 bases:

>100_bases
TTATGCTGTTTCCAGGGAGGCAAACAGTGTTTCAAGTGATGGCGCGGCCCCGTGTCGGCTAGAATGCCGCATTTCCTTCA
AGACGCTGTCGAGGTCTGAT

Downstream 100 bases:

>100_bases
TCCGGAGGTCGCCATGCCCGCGTTCAACCGACGCAAGAAGCGTTTTACCGCCGGCAACGTGACGCACCTGCGTCCGCTGC
GGCACAACCAGCCGCGCTCG

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MNNTYPHPIIAREGWPYLGGIFIVTLIVQAAAGFGWAWPFWVLTLFVLQFFRDPARAVPTQANAILSPADGRIVAVEQVR
DPYADRDSLKISVFMNVFNVHSNRAPVDGTVQQVQYFPGKFVNADLDKASLENERNAIVLRRADGQLVTSVQVAGLIARR
ILCYTKAGEVLTRGQRYGFIRFGSRVDVYLPLTARPRVTIGEKVSATLTVLAELD

Sequences:

>Translated_215_residues
MNNTYPHPIIAREGWPYLGGIFIVTLIVQAAAGFGWAWPFWVLTLFVLQFFRDPARAVPTQANAILSPADGRIVAVEQVR
DPYADRDSLKISVFMNVFNVHSNRAPVDGTVQQVQYFPGKFVNADLDKASLENERNAIVLRRADGQLVTSVQVAGLIARR
ILCYTKAGEVLTRGQRYGFIRFGSRVDVYLPLTARPRVTIGEKVSATLTVLAELD
>Mature_215_residues
MNNTYPHPIIAREGWPYLGGIFIVTLIVQAAAGFGWAWPFWVLTLFVLQFFRDPARAVPTQANAILSPADGRIVAVEQVR
DPYADRDSLKISVFMNVFNVHSNRAPVDGTVQQVQYFPGKFVNADLDKASLENERNAIVLRRADGQLVTSVQVAGLIARR
ILCYTKAGEVLTRGQRYGFIRFGSRVDVYLPLTARPRVTIGEKVSATLTVLAELD

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_RALPJ (B2U7S2)

Other databases:

- EMBL:   CP001068
- RefSeq:   YP_001899791.1
- GeneID:   6288400
- GenomeReviews:   CP001068_GR
- KEGG:   rpi:Rpic_2225
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 23907; Mature: 23907

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNTYPHPIIAREGWPYLGGIFIVTLIVQAAAGFGWAWPFWVLTLFVLQFFRDPARAVPT
CCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHCCCC
QANAILSPADGRIVAVEQVRDPYADRDSLKISVFMNVFNVHSNRAPVDGTVQQVQYFPGK
CCCEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEEHHHCCCCCCCCHHHHHHHHCCCC
FVNADLDKASLENERNAIVLRRADGQLVTSVQVAGLIARRILCYTKAGEVLTRGQRYGFI
CCCCCCCHHHCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEE
RFGSRVDVYLPLTARPRVTIGEKVSATLTVLAELD
EECCEEEEEEECCCCCCEEECCCCEEEEEEEEECC
>Mature Secondary Structure
MNNTYPHPIIAREGWPYLGGIFIVTLIVQAAAGFGWAWPFWVLTLFVLQFFRDPARAVPT
CCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHCCCC
QANAILSPADGRIVAVEQVRDPYADRDSLKISVFMNVFNVHSNRAPVDGTVQQVQYFPGK
CCCEEECCCCCCEEEHHHHCCCCCCCCCEEEEEEEEEHHHCCCCCCCCHHHHHHHHCCCC
FVNADLDKASLENERNAIVLRRADGQLVTSVQVAGLIARRILCYTKAGEVLTRGQRYGFI
CCCCCCCHHHCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEEE
RFGSRVDVYLPLTARPRVTIGEKVSATLTVLAELD
EECCEEEEEEECCCCCCEEECCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA