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The map label for this gene is ydeM [H]

Identifier: 187929274

GI number: 187929274

Start: 2305248

End: 2305733

Strand: Reverse

Name: ydeM [H]

Synonym: Rpic_2195

Alternate gene names: 187929274

Gene position: 2305733-2305248 (Counterclockwise)

Preceding gene: 187929275

Following gene: 187929273

Centisome position: 58.48

GC content: 61.32

Gene sequence:

>486_bases
ATGGCAGAGAACGAAAGGGCAGAGGCCACACGATCGTACGAGTTCTACTTCGACGATTTTGAAGTCGGGCGCACGCTGCA
GATGGGTTCCTACACCGTCACCGAAGACGAGATTCTGACCTTCGCGCGGCAGTACGATCCGCAGCCATTCCACATCGATG
CAGAGGCCGCCAAGCACAGCATCTACGGCGGCATTATTTCGAGCGGCTGGATGACCTGCTCGATCATGATGCGGCTGATG
GTCACCGGCTTCCTCGGCAAGGCAGCCAGCATGGGTTCCCCAGGCGTGGATGAAATCCGCTGGATGAAGCCGGTGTATCC
GGGCGATACGCTGTCGGTGTCGAGCACCTGCATGGAAGTGCGTCCGTCGCAGTCAAAGCCGGACCGCGGCGTGGCCGTCA
ACCGCTGGGAGGCTCGCAACCAGCGCGGAGAACTTGTGTGCACGGTCACGGGCATGGGCTTGTTTGGCCGCCGCCCGAAG
GCTTGA

Upstream 100 bases:

>100_bases
TCGCACGCTTCACATCGCTGCCCGGCTTCCAGCAGGCGGCGTAACGGCAAACCTGAACGCCCCGCATTCGTGCGGGGCGT
TGTCATTTGGAGGAGACGAC

Downstream 100 bases:

>100_bases
TGACACGTCATCGCATCACAACAAGGAGACAACGCAGATGCGCATCATCGAATCGCTCGACGAGCTGAAAGGTTTGATCG
GCCAGGAAGTTGCCGTGAGT

Product: MaoC domain-containing protein dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MAENERAEATRSYEFYFDDFEVGRTLQMGSYTVTEDEILTFARQYDPQPFHIDAEAAKHSIYGGIISSGWMTCSIMMRLM
VTGFLGKAASMGSPGVDEIRWMKPVYPGDTLSVSSTCMEVRPSQSKPDRGVAVNRWEARNQRGELVCTVTGMGLFGRRPK
A

Sequences:

>Translated_161_residues
MAENERAEATRSYEFYFDDFEVGRTLQMGSYTVTEDEILTFARQYDPQPFHIDAEAAKHSIYGGIISSGWMTCSIMMRLM
VTGFLGKAASMGSPGVDEIRWMKPVYPGDTLSVSSTCMEVRPSQSKPDRGVAVNRWEARNQRGELVCTVTGMGLFGRRPK
A
>Mature_160_residues
AENERAEATRSYEFYFDDFEVGRTLQMGSYTVTEDEILTFARQYDPQPFHIDAEAAKHSIYGGIISSGWMTCSIMMRLMV
TGFLGKAASMGSPGVDEIRWMKPVYPGDTLSVSSTCMEVRPSQSKPDRGVAVNRWEARNQRGELVCTVTGMGLFGRRPKA

Specific function: Phenylacetic acid aerobic catabolism. [C]

COG id: COG2030

COG function: function code I; Acyl dehydratase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002539 [H]

Pfam domain/function: PF01575 MaoC_dehydratas [H]

EC number: NA

Molecular weight: Translated: 18011; Mature: 17879

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS00381 CLP_PROTEASE_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAENERAEATRSYEFYFDDFEVGRTLQMGSYTVTEDEILTFARQYDPQPFHIDAEAAKHS
CCCCCCCHHHEEEEEEECCCCCCCEEECCCEEECHHHHHHHHHHCCCCCEEEEHHHHHHH
IYGGIISSGWMTCSIMMRLMVTGFLGKAASMGSPGVDEIRWMKPVYPGDTLSVSSTCMEV
HHCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEECCCCCCCCCCHHHHHHCC
RPSQSKPDRGVAVNRWEARNQRGELVCTVTGMGLFGRRPKA
CCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
AENERAEATRSYEFYFDDFEVGRTLQMGSYTVTEDEILTFARQYDPQPFHIDAEAAKHS
CCCCCCHHHEEEEEEECCCCCCCEEECCCEEECHHHHHHHHHHCCCCCEEEEHHHHHHH
IYGGIISSGWMTCSIMMRLMVTGFLGKAASMGSPGVDEIRWMKPVYPGDTLSVSSTCMEV
HHCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEECCCCCCCCCCHHHHHHCC
RPSQSKPDRGVAVNRWEARNQRGELVCTVTGMGLFGRRPKA
CCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]