Click here to switch to the map view.

The map label for this gene is sdhC [C]

Identifier: 187929230

GI number: 187929230

Start: 2263155

End: 2263565

Strand: Reverse

Name: sdhC [C]

Synonym: Rpic_2151

Alternate gene names: 187929230

Gene position: 2263565-2263155 (Counterclockwise)

Preceding gene: 187929231

Following gene: 187929229

Centisome position: 57.41

GC content: 57.66

Gene sequence:

>411_bases
ATGGCAGAAGCCATCAAGAAAGCCAGGCCGGTATACAGGAACATCGGTTTGGGCGACATCGCCCGCTACCGCTTGCCCTG
GGCCGGTAAGGTGTCCATCCTGCACCGTGCCAGCGGTGCGCTGATGTTCCTTCTTCTTCCGTTCGTGCTGTACTTGTTCG
AACAAAGTCTCACGTCGGAAATCAGTTTCGCCAAGTTCTCGGCGCTTCTGTCCAACGGTTTTGCCAAGGTCGTCGTCCTC
GCGCTCATCTGGGCTTATCTGCACCATTTCTGCGCTGGCGTCCGTTACCTGATCCTCGATCTGCATATTGGCATCGACAA
GGCTTCGGCCTCCAAGTCGGCTGTGAGCGTGCTGATCGTCAGCCTGCTGCTGACCGTCGTGTTCGGCGCCAAGCTGTTCG
GCCTGTTCTGA

Upstream 100 bases:

>100_bases
GCATGGAATTTATGGTGCGCTGCGCAACAAAAGCGCGCTAAAATCTCGCGGATTTGTGCAAAGCTGTTTTGTTTGTTGAT
TAGCCAATTGGGGTCTGACC

Downstream 100 bases:

>100_bases
GGAGCCCCTGATGGCAAATAACAATATTGGTCCCAAGCGCCTCGTTGTGGGCGCGCACTACGGCCTGAAGGACTTCCTCG
CGCAGCGCGTCACCGCCGTG

Product: succinate dehydrogenase, cytochrome b556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Succinate Dehydrogenase Cytochrome B Subunit; Succinate Dehydrogenase Subunit C; Succinate Dehydrogenase; Succinate Dehydrogenase Hydrophobic Subunit Cytochrome

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MAEAIKKARPVYRNIGLGDIARYRLPWAGKVSILHRASGALMFLLLPFVLYLFEQSLTSEISFAKFSALLSNGFAKVVVL
ALIWAYLHHFCAGVRYLILDLHIGIDKASASKSAVSVLIVSLLLTVVFGAKLFGLF

Sequences:

>Translated_136_residues
MAEAIKKARPVYRNIGLGDIARYRLPWAGKVSILHRASGALMFLLLPFVLYLFEQSLTSEISFAKFSALLSNGFAKVVVL
ALIWAYLHHFCAGVRYLILDLHIGIDKASASKSAVSVLIVSLLLTVVFGAKLFGLF
>Mature_135_residues
AEAIKKARPVYRNIGLGDIARYRLPWAGKVSILHRASGALMFLLLPFVLYLFEQSLTSEISFAKFSALLSNGFAKVVVLA
LIWAYLHHFCAGVRYLILDLHIGIDKASASKSAVSVLIVSLLLTVVFGAKLFGLF

Specific function: Mono-Heme Cytochrome Of The Succinate Dehydrogenase Complex. [C]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786940, Length=127, Percent_Identity=30.7086614173228, Blast_Score=61, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.3.99.1

Molecular weight: Translated: 14941; Mature: 14810

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEAIKKARPVYRNIGLGDIARYRLPWAGKVSILHRASGALMFLLLPFVLYLFEQSLTSE
CCHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISFAKFSALLSNGFAKVVVLALIWAYLHHFCAGVRYLILDLHIGIDKASASKSAVSVLIV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
SLLLTVVFGAKLFGLF
HHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AEAIKKARPVYRNIGLGDIARYRLPWAGKVSILHRASGALMFLLLPFVLYLFEQSLTSE
CHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISFAKFSALLSNGFAKVVVLALIWAYLHHFCAGVRYLILDLHIGIDKASASKSAVSVLIV
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
SLLLTVVFGAKLFGLF
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA