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The map label for this gene is exbD1 [H]

Identifier: 187929197

GI number: 187929197

Start: 2233517

End: 2233927

Strand: Direct

Name: exbD1 [H]

Synonym: Rpic_2118

Alternate gene names: 187929197

Gene position: 2233517-2233927 (Clockwise)

Preceding gene: 187929196

Following gene: 187929198

Centisome position: 56.65

GC content: 61.07

Gene sequence:

>411_bases
ATGTCCTTCGGATCTTTCGACAACGATGACGAGGTGATGAGCGAAATCAACATGACGCCGCTGGTCGACGTCATGCTGGT
GCTGCTGATCATCTTCATCATCACCATTCCGGTGATCAACCACGCGGTCAAGATTGACCTGCCGCGCGCGTCCAACAAAC
CCGACGACGCCAAGCCGCAAAGCGTGAACGTCGAGATCAACGCGGACGGCCAGGTGTTCTGGAACAACCAGCCGGTCGAC
GAGGCCACGCTGCAAGCCGACATCGCCCAGGCCGCGCAGCAGCAGCCGCAACCGGAAATGCATCTGCGCGCTGACCGCAA
CGTGCGCTACGAGCGTGTGGCGCAGGTGATGGCTTCCATCCAGCGCGGTGGCCTCTCGCGCATCGGCTTTGTCACGGAGC
CACAGCACTAA

Upstream 100 bases:

>100_bases
GCACGCCTATTTCGTGACGGGCGCGCGTCTGCGCCCAGGCGCCTCGCGTGATGACGCCGGCGTGCGCCTAACTGCGGTCA
AGCAGCAGTAAGGAGAGACC

Downstream 100 bases:

>100_bases
CGCCCCACACACCTCGTAGCCCTGGTCGCCCGTTCTCGTACGGTTTTTTTCGCACCAGCGCATCCAGACTCACAGCACCT
CCACGCAACCGGGCTACGCG

Product: Biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MSFGSFDNDDEVMSEINMTPLVDVMLVLLIIFIITIPVINHAVKIDLPRASNKPDDAKPQSVNVEINADGQVFWNNQPVD
EATLQADIAQAAQQQPQPEMHLRADRNVRYERVAQVMASIQRGGLSRIGFVTEPQH

Sequences:

>Translated_136_residues
MSFGSFDNDDEVMSEINMTPLVDVMLVLLIIFIITIPVINHAVKIDLPRASNKPDDAKPQSVNVEINADGQVFWNNQPVD
EATLQADIAQAAQQQPQPEMHLRADRNVRYERVAQVMASIQRGGLSRIGFVTEPQH
>Mature_135_residues
SFGSFDNDDEVMSEINMTPLVDVMLVLLIIFIITIPVINHAVKIDLPRASNKPDDAKPQSVNVEINADGQVFWNNQPVDE
ATLQADIAQAAQQQPQPEMHLRADRNVRYERVAQVMASIQRGGLSRIGFVTEPQH

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=126, Percent_Identity=34.1269841269841, Blast_Score=88, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15191; Mature: 15060

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFGSFDNDDEVMSEINMTPLVDVMLVLLIIFIITIPVINHAVKIDLPRASNKPDDAKPQ
CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCC
SVNVEINADGQVFWNNQPVDEATLQADIAQAAQQQPQPEMHLRADRNVRYERVAQVMASI
EEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHH
QRGGLSRIGFVTEPQH
HHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SFGSFDNDDEVMSEINMTPLVDVMLVLLIIFIITIPVINHAVKIDLPRASNKPDDAKPQ
CCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCC
SVNVEINADGQVFWNNQPVDEATLQADIAQAAQQQPQPEMHLRADRNVRYERVAQVMASI
EEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHH
QRGGLSRIGFVTEPQH
HHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]