| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
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The map label for this gene is nrdD [H]
Identifier: 187929185
GI number: 187929185
Start: 2221483
End: 2223546
Strand: Direct
Name: nrdD [H]
Synonym: Rpic_2106
Alternate gene names: 187929185
Gene position: 2221483-2223546 (Clockwise)
Preceding gene: 187929184
Following gene: 187929186
Centisome position: 56.35
GC content: 63.37
Gene sequence:
>2064_bases ATGACGGGCACACAGGTCACTGGGCAAGTCACCAAGCGCGACGGTTCATTGGCGCCGTTCGATGCGCAGAAGATCCGACA GGCCATCGCCGCAGCCGGCCAGGCCACCGGCGAATTCGACACCATCGAGGCGCAGCACCTGACCTCAGGCGTGGTTGCAC ATCTTGCGCCGCTCCCCTGCCCAGGTATCGAAATCATCCAGAACTGCGTGGAAGAGGTGCTGGTGGACGCCGGCTATTGG CGCACCGCGCGCGCCTACATCGTCTACCGCGAACAGCACGCCCGGCTGCGTTCGCTCAAGCACACGCTGGTCGATGTCGA AAGCACGATGGAGGAGTACCTCGAGCAGCGCGACTGGCGCGTCAACGCCAACGCCAATCAGGGCTATAGCCTGGGCGGCC TGATCCTGAACGTGGCGGGCAAGGTCACGGCCAACTACTGGCTTTCGCACGTCTACAGCCCCGAAGCGGGCACGGCGCAC CGCGAGGGCGACCTCCACATCCACGATCTCGACATGCTCTCGGGCTACTGCGCAGGCTGGTCGTTGCGGCAGTTGCTGAC GGAGGGATTCAACGGCGTGCCGGGCAAGGTGGAGGCAACGCCGCCGCGGCATATGTCCGCAGCCATCGGGCAGATCGTCA ACTTTCTGGGCACGCTGCAGAACGAGTGGGCCGGCGCGCAGGCGTTCAGTTCGTTCGATACCTACATGGCGCCGTTCATC CGCCGCGACGCGATGTCGTATGCCGCGGTCAAGCAGTCCATGCAGGAACTGATCTACAACCTGAACGTACCCAGCCGCTG GGGCACGCAAACGCCGTTCACCAACCTCACGTTCGACTGGACTTGCCCGGCCGACCTGCGCGAACAGGTTCCTTACATCG GCGGCGAAGAGATGCCCTTCACCTATGGCGATCTCCAGCCCGAGATGGACATGATCAACCGCGCGTATATCGAGGTCATG ATGGCCGGCGATGCGAAAGACCGCGCGTTCACGTTCCCGATACCGACCTACAACATCACGTCGGACTTCGATTGGGAGCA CCCAAACACAACGTTGCTGTTCGAGATGACGGCGCGCTACGGGCTGCCCTACTTCCAGAACTTCCTCAACTCCGATCTGG AGCCGCACATGGTGCGCTCGATGTGCTGCCGCCTGCAGCTTGACCTGCGCGAACTGCTCAAGCGCGGCAACGGGTTGTTT GGCTCGGCTGAGCAGACCGGGTCCATCGGCGTCGTGACCGTCAACTGCGCACGACTGGGGTATCTCTACGCGGGCGATGA GGCAGCGCTGCTGGCGCGGCTGGACACGCTGCTCGCCCTCGGCCGCGATGTGCTGGAGGTCAAGCGCAAGTTCGTGCAGC GGCTGATCGATCAGGGGCTGTATCCATACACGCGCCGCTACCTGGGCACGCTGCGCAACCACTTCAGTACGCTGGGCGTG AACGGCATCAACGAAATGGTGCGCAACTTCACACACGATGCCGACGACATCACCACGCCATTCGGCCATGCCATGGCGGT GCGCCTGCTCGACCACGTACGTCAGCGCATGACGGAATTCCAGGAGGCGACGGGGCACCTGTACAACCTTGAAGCCACAC CCGCAGAGGGCACTACCTACCGCTTCGCCCGCGAAGACCGCAAGCGCTGGCCTGGCATCCTGCAGGCCGGCACGGCAGCG CAGCCGTATTACACCAACTCAAGCCAGTTGCCCGTCGGCTACACCGACGATCCGTTTGAAGCGCTGGCGCGCCAGGAAGC ACTGCAGAGCAAGTACACGGGCGGCACGGTCCTGCACCTGTACATGAACGAAGCGATCTCATCGCCGCAGGCATGCAAGG AACTCGTGCGCCGCGCGCTGGCCAACTTCCGCCTGCCGTACATCACCATCACCCCGACGTTTTCGATCTGCCCGAAGCAC GGCTATCTGTCCGGCCATCACACGTTCTGTCCGAAATGCGATGCAGATCTGCTGGCCCAGCAGCCCCACGGCAAGTGCGG CTGCACAGGGGCCGGCACCCCAGGTTCTTCCACCCACCTCCATCACGAAGGAGCCTCCGTATGA
Upstream 100 bases:
>100_bases GTTGACCGGGGTCAAGCGATTCAAAGATCCAGGTCTTTAAGGCTCACAGACCACAATATGTAGTGCTAGTCTGACTCCAT ACCACTATATGGAGTACCTC
Downstream 100 bases:
>100_bases CCACCGTTGCACAAACCACCAACCGCACCGTTGCACTCGACGACAGCCAGCGCACGCGCTGCGAAGTCTGGACCCGCGTG ATGGGCTATCACCGGCCCGT
Product: anaerobic ribonucleoside triphosphate reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 687; Mature: 686
Protein sequence:
>687_residues MTGTQVTGQVTKRDGSLAPFDAQKIRQAIAAAGQATGEFDTIEAQHLTSGVVAHLAPLPCPGIEIIQNCVEEVLVDAGYW RTARAYIVYREQHARLRSLKHTLVDVESTMEEYLEQRDWRVNANANQGYSLGGLILNVAGKVTANYWLSHVYSPEAGTAH REGDLHIHDLDMLSGYCAGWSLRQLLTEGFNGVPGKVEATPPRHMSAAIGQIVNFLGTLQNEWAGAQAFSSFDTYMAPFI RRDAMSYAAVKQSMQELIYNLNVPSRWGTQTPFTNLTFDWTCPADLREQVPYIGGEEMPFTYGDLQPEMDMINRAYIEVM MAGDAKDRAFTFPIPTYNITSDFDWEHPNTTLLFEMTARYGLPYFQNFLNSDLEPHMVRSMCCRLQLDLRELLKRGNGLF GSAEQTGSIGVVTVNCARLGYLYAGDEAALLARLDTLLALGRDVLEVKRKFVQRLIDQGLYPYTRRYLGTLRNHFSTLGV NGINEMVRNFTHDADDITTPFGHAMAVRLLDHVRQRMTEFQEATGHLYNLEATPAEGTTYRFAREDRKRWPGILQAGTAA QPYYTNSSQLPVGYTDDPFEALARQEALQSKYTGGTVLHLYMNEAISSPQACKELVRRALANFRLPYITITPTFSICPKH GYLSGHHTFCPKCDADLLAQQPHGKCGCTGAGTPGSSTHLHHEGASV
Sequences:
>Translated_687_residues MTGTQVTGQVTKRDGSLAPFDAQKIRQAIAAAGQATGEFDTIEAQHLTSGVVAHLAPLPCPGIEIIQNCVEEVLVDAGYW RTARAYIVYREQHARLRSLKHTLVDVESTMEEYLEQRDWRVNANANQGYSLGGLILNVAGKVTANYWLSHVYSPEAGTAH REGDLHIHDLDMLSGYCAGWSLRQLLTEGFNGVPGKVEATPPRHMSAAIGQIVNFLGTLQNEWAGAQAFSSFDTYMAPFI RRDAMSYAAVKQSMQELIYNLNVPSRWGTQTPFTNLTFDWTCPADLREQVPYIGGEEMPFTYGDLQPEMDMINRAYIEVM MAGDAKDRAFTFPIPTYNITSDFDWEHPNTTLLFEMTARYGLPYFQNFLNSDLEPHMVRSMCCRLQLDLRELLKRGNGLF GSAEQTGSIGVVTVNCARLGYLYAGDEAALLARLDTLLALGRDVLEVKRKFVQRLIDQGLYPYTRRYLGTLRNHFSTLGV NGINEMVRNFTHDADDITTPFGHAMAVRLLDHVRQRMTEFQEATGHLYNLEATPAEGTTYRFAREDRKRWPGILQAGTAA QPYYTNSSQLPVGYTDDPFEALARQEALQSKYTGGTVLHLYMNEAISSPQACKELVRRALANFRLPYITITPTFSICPKH GYLSGHHTFCPKCDADLLAQQPHGKCGCTGAGTPGSSTHLHHEGASV >Mature_686_residues TGTQVTGQVTKRDGSLAPFDAQKIRQAIAAAGQATGEFDTIEAQHLTSGVVAHLAPLPCPGIEIIQNCVEEVLVDAGYWR TARAYIVYREQHARLRSLKHTLVDVESTMEEYLEQRDWRVNANANQGYSLGGLILNVAGKVTANYWLSHVYSPEAGTAHR EGDLHIHDLDMLSGYCAGWSLRQLLTEGFNGVPGKVEATPPRHMSAAIGQIVNFLGTLQNEWAGAQAFSSFDTYMAPFIR RDAMSYAAVKQSMQELIYNLNVPSRWGTQTPFTNLTFDWTCPADLREQVPYIGGEEMPFTYGDLQPEMDMINRAYIEVMM AGDAKDRAFTFPIPTYNITSDFDWEHPNTTLLFEMTARYGLPYFQNFLNSDLEPHMVRSMCCRLQLDLRELLKRGNGLFG SAEQTGSIGVVTVNCARLGYLYAGDEAALLARLDTLLALGRDVLEVKRKFVQRLIDQGLYPYTRRYLGTLRNHFSTLGVN GINEMVRNFTHDADDITTPFGHAMAVRLLDHVRQRMTEFQEATGHLYNLEATPAEGTTYRFAREDRKRWPGILQAGTAAQ PYYTNSSQLPVGYTDDPFEALARQEALQSKYTGGTVLHLYMNEAISSPQACKELVRRALANFRLPYITITPTFSICPKHG YLSGHHTFCPKCDADLLAQQPHGKCGCTGAGTPGSSTHLHHEGASV
Specific function: Unknown
COG id: COG1328
COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glycine radical domain [H]
Homologues:
Organism=Escherichia coli, GI1790686, Length=625, Percent_Identity=24.96, Blast_Score=127, Evalue=2e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005144 - InterPro: IPR001150 - InterPro: IPR019777 - InterPro: IPR012833 [H]
Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]
EC number: =1.17.4.2 [H]
Molecular weight: Translated: 76600; Mature: 76468
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: PS51161 ATP_CONE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGTQVTGQVTKRDGSLAPFDAQKIRQAIAAAGQATGEFDTIEAQHLTSGVVAHLAPLPC CCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC PGIEIIQNCVEEVLVDAGYWRTARAYIVYREQHARLRSLKHTLVDVESTMEEYLEQRDWR CCHHHHHHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE VNANANQGYSLGGLILNVAGKVTANYWLSHVYSPEAGTAHREGDLHIHDLDMLSGYCAGW EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHCCH SLRQLLTEGFNGVPGKVEATPPRHMSAAIGQIVNFLGTLQNEWAGAQAFSSFDTYMAPFI HHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH RRDAMSYAAVKQSMQELIYNLNVPSRWGTQTPFTNLTFDWTCPADLREQVPYIGGEEMPF HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCC TYGDLQPEMDMINRAYIEVMMAGDAKDRAFTFPIPTYNITSDFDWEHPNTTLLFEMTARY CCCCCCCHHHHHHHHHHHEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEHHHH GLPYFQNFLNSDLEPHMVRSMCCRLQLDLRELLKRGNGLFGSAEQTGSIGVVTVNCARLG CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHHEE YLYAGDEAALLARLDTLLALGRDVLEVKRKFVQRLIDQGLYPYTRRYLGTLRNHFSTLGV EEEECCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC NGINEMVRNFTHDADDITTPFGHAMAVRLLDHVRQRMTEFQEATGHLYNLEATPAEGTTY CHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEE RFAREDRKRWPGILQAGTAAQPYYTNSSQLPVGYTDDPFEALARQEALQSKYTGGTVLHL HHHHHHHHHCCCHHCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE YMNEAISSPQACKELVRRALANFRLPYITITPTFSICPKHGYLSGHHTFCPKCDADLLAQ EHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCCCCCCCCCCCCCCCCCHHHHHC QPHGKCGCTGAGTPGSSTHLHHEGASV CCCCCCCCCCCCCCCCCCEECCCCCCC >Mature Secondary Structure TGTQVTGQVTKRDGSLAPFDAQKIRQAIAAAGQATGEFDTIEAQHLTSGVVAHLAPLPC CCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC PGIEIIQNCVEEVLVDAGYWRTARAYIVYREQHARLRSLKHTLVDVESTMEEYLEQRDWR CCHHHHHHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE VNANANQGYSLGGLILNVAGKVTANYWLSHVYSPEAGTAHREGDLHIHDLDMLSGYCAGW EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHCCH SLRQLLTEGFNGVPGKVEATPPRHMSAAIGQIVNFLGTLQNEWAGAQAFSSFDTYMAPFI HHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH RRDAMSYAAVKQSMQELIYNLNVPSRWGTQTPFTNLTFDWTCPADLREQVPYIGGEEMPF HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCC TYGDLQPEMDMINRAYIEVMMAGDAKDRAFTFPIPTYNITSDFDWEHPNTTLLFEMTARY CCCCCCCHHHHHHHHHHHEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEHHHH GLPYFQNFLNSDLEPHMVRSMCCRLQLDLRELLKRGNGLFGSAEQTGSIGVVTVNCARLG CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHHEE YLYAGDEAALLARLDTLLALGRDVLEVKRKFVQRLIDQGLYPYTRRYLGTLRNHFSTLGV EEEECCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC NGINEMVRNFTHDADDITTPFGHAMAVRLLDHVRQRMTEFQEATGHLYNLEATPAEGTTY CHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEE RFAREDRKRWPGILQAGTAAQPYYTNSSQLPVGYTDDPFEALARQEALQSKYTGGTVLHL HHHHHHHHHCCCHHCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE YMNEAISSPQACKELVRRALANFRLPYITITPTFSICPKHGYLSGHHTFCPKCDADLLAQ EHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCCCCCCCCCCCCCCCCCHHHHHC QPHGKCGCTGAGTPGSSTHLHHEGASV CCCCCCCCCCCCCCCCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8421692; 7610040; 9278503; 8083158; 7852304 [H]