Click here to switch to the map view.

The map label for this gene is arrD [H]

Identifier: 187929122

GI number: 187929122

Start: 2152406

End: 2152858

Strand: Reverse

Name: arrD [H]

Synonym: Rpic_2043

Alternate gene names: 187929122

Gene position: 2152858-2152406 (Counterclockwise)

Preceding gene: 187929123

Following gene: 187929121

Centisome position: 54.61

GC content: 64.9

Gene sequence:

>453_bases
ATGAGCACTGAGCACAACCCACGCACCACCGGCGAGCGAGGCCTCGCGCTGATCAAGGAATCGGAAGGGCTGCGTCTGTC
GACGTATCTGGATGCGGTCGGTAAGCCGACCATCGGCTACGGCCATTTGATCCGGCCTGGCGAGACCTTCAACGGGCCGA
TCTCGCAGCAGCATGCCGAAGCGCTGCTGCGCAAAGACCTGGCCGACACCGAGCAGGGCATTGCGAAGGCAGTGCGTGTG
TCGATCACGCAAGGGCAGTTCGACGCGCTGGCGTCCTTCGTCTTCAACCTGGGAGCGGGGCGGCTGCGCTCGTCGACGCT
GCTGCGCAAGCTCAACGCCGGGGACTACGTCGGCGCAGCCAACCAGTTCCTGCTCTGGGACAAGGCCGGCGGCAAGCCGC
TCAAAGGGCTGACGAAGCGTCGTCAGGCCGAACGCAAGCTGTTCCTGTCCTGA

Upstream 100 bases:

>100_bases
ATCGACGAATACACAAATCGGCTGGTGCCAAGGCCCGTGCAGTCAAATGCCGCCGCCTCCGATGGCTCCGGCACAACCAG
CACGCCGCGGGAGAAGGGCG

Downstream 100 bases:

>100_bases
TTCACCACCAGGTTACTTCAACGTTCAACGGAGAAGCTCGCATGCATACCGAACCGATGTCCGTGATTCCCACCACCCGC
CCACGCCGCCTGTATCGCGT

Product: Lysozyme

Products: NA

Alternate protein names: Endolysin; Lysis protein; Muramidase [H]

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MSTEHNPRTTGERGLALIKESEGLRLSTYLDAVGKPTIGYGHLIRPGETFNGPISQQHAEALLRKDLADTEQGIAKAVRV
SITQGQFDALASFVFNLGAGRLRSSTLLRKLNAGDYVGAANQFLLWDKAGGKPLKGLTKRRQAERKLFLS

Sequences:

>Translated_150_residues
MSTEHNPRTTGERGLALIKESEGLRLSTYLDAVGKPTIGYGHLIRPGETFNGPISQQHAEALLRKDLADTEQGIAKAVRV
SITQGQFDALASFVFNLGAGRLRSSTLLRKLNAGDYVGAANQFLLWDKAGGKPLKGLTKRRQAERKLFLS
>Mature_149_residues
STEHNPRTTGERGLALIKESEGLRLSTYLDAVGKPTIGYGHLIRPGETFNGPISQQHAEALLRKDLADTEQGIAKAVRVS
ITQGQFDALASFVFNLGAGRLRSSTLLRKLNAGDYVGAANQFLLWDKAGGKPLKGLTKRRQAERKLFLS

Specific function: Essential for lysis of bacterial cell wall, by showing cell wall hydrolyzing activity [H]

COG id: COG3772

COG function: function code R; Phage-related lysozyme (muraminidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 24 family [H]

Homologues:

Organism=Escherichia coli, GI1786768, Length=131, Percent_Identity=43.5114503816794, Blast_Score=100, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002196 [H]

Pfam domain/function: PF00959 Phage_lysozyme [H]

EC number: =3.2.1.17 [H]

Molecular weight: Translated: 16334; Mature: 16203

Theoretical pI: Translated: 10.70; Mature: 10.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEHNPRTTGERGLALIKESEGLRLSTYLDAVGKPTIGYGHLIRPGETFNGPISQQHAE
CCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCEECCCCCCCCCCHHHHHH
ALLRKDLADTEQGIAKAVRVSITQGQFDALASFVFNLGAGRLRSSTLLRKLNAGDYVGAA
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCC
NQFLLWDKAGGKPLKGLTKRRQAERKLFLS
CEEEEEECCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STEHNPRTTGERGLALIKESEGLRLSTYLDAVGKPTIGYGHLIRPGETFNGPISQQHAE
CCCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCEECCCCCCCCCCHHHHHH
ALLRKDLADTEQGIAKAVRVSITQGQFDALASFVFNLGAGRLRSSTLLRKLNAGDYVGAA
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCC
NQFLLWDKAGGKPLKGLTKRRQAERKLFLS
CEEEEEECCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]