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The map label for this gene is ybaO [H]

Identifier: 187929081

GI number: 187929081

Start: 2109099

End: 2109569

Strand: Reverse

Name: ybaO [H]

Synonym: Rpic_2001

Alternate gene names: 187929081

Gene position: 2109569-2109099 (Counterclockwise)

Preceding gene: 187929083

Following gene: 187929080

Centisome position: 53.51

GC content: 62.42

Gene sequence:

>471_bases
ATGGACGCCATTGACCGCGAACTACTGAGGCTGTTGCAGGCCGATGCGACGCTGCCCATCGCAGAGCTTGCGCAGCGCGT
GAACCTCTCCCAAACACCGTGCTGGAAGCGGGTGCAGCGACTCAAGGACACGGGCGTCATCCGCGCCCAGGTGGCGCTGT
GCGACGCACGCAAGCTGGGCGTCGGCACCACGGTATTCGTGGCCGTGCGCACCGATCAACACACCGAGAAATGGGCGCAG
CGTTTCACGCAGGTGGTGCGCGATATGCCCGAGGTGGTGGAGGTCTACCGGATGAGCGGCGAGATGGACTATCTGCTGCG
TGTGGCGGTGGCGGGCATTGAAGATTACGACCGCGTGTACAAACACCTCATCAAGTCCGTTCCGCTGTCGGATGTGAGCT
CATCGTTTTCGATGGAGCAGATCAAGTATTCGACTGCGCTGCCGGTGCGGGATGGGGGGCAGGGGGATTGA

Upstream 100 bases:

>100_bases
CAGCCCAGAAAAATAATTCAAAGTTTCCTGTGAGTTGCTCGATGTGGCAGAAAATATTCCCTAAAATTAAGAATCTATAG
AAGATAATTTTTACACCGAA

Downstream 100 bases:

>100_bases
GGGCTTGGGTGGAGGCACTGTCCGCGCAATTAGCCAAGCAGCGTGAGTCGTTGTCGGAACGCATTGCGCGCGCGCTGGCT
CCCGAAGCCGGGGCGGCCCC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MDAIDRELLRLLQADATLPIAELAQRVNLSQTPCWKRVQRLKDTGVIRAQVALCDARKLGVGTTVFVAVRTDQHTEKWAQ
RFTQVVRDMPEVVEVYRMSGEMDYLLRVAVAGIEDYDRVYKHLIKSVPLSDVSSSFSMEQIKYSTALPVRDGGQGD

Sequences:

>Translated_156_residues
MDAIDRELLRLLQADATLPIAELAQRVNLSQTPCWKRVQRLKDTGVIRAQVALCDARKLGVGTTVFVAVRTDQHTEKWAQ
RFTQVVRDMPEVVEVYRMSGEMDYLLRVAVAGIEDYDRVYKHLIKSVPLSDVSSSFSMEQIKYSTALPVRDGGQGD
>Mature_156_residues
MDAIDRELLRLLQADATLPIAELAQRVNLSQTPCWKRVQRLKDTGVIRAQVALCDARKLGVGTTVFVAVRTDQHTEKWAQ
RFTQVVRDMPEVVEVYRMSGEMDYLLRVAVAGIEDYDRVYKHLIKSVPLSDVSSSFSMEQIKYSTALPVRDGGQGD

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=55.3333333333333, Blast_Score=179, Evalue=9e-47,
Organism=Escherichia coli, GI1787116, Length=151, Percent_Identity=31.7880794701987, Blast_Score=87, Evalue=3e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17612; Mature: 17612

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAIDRELLRLLQADATLPIAELAQRVNLSQTPCWKRVQRLKDTGVIRAQVALCDARKLG
CCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCC
VGTTVFVAVRTDQHTEKWAQRFTQVVRDMPEVVEVYRMSGEMDYLLRVAVAGIEDYDRVY
CCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHH
KHLIKSVPLSDVSSSFSMEQIKYSTALPVRDGGQGD
HHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MDAIDRELLRLLQADATLPIAELAQRVNLSQTPCWKRVQRLKDTGVIRAQVALCDARKLG
CCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCC
VGTTVFVAVRTDQHTEKWAQRFTQVVRDMPEVVEVYRMSGEMDYLLRVAVAGIEDYDRVY
CCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHH
KHLIKSVPLSDVSSSFSMEQIKYSTALPVRDGGQGD
HHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]