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The map label for this gene is glcD [H]

Identifier: 187929077

GI number: 187929077

Start: 2106042

End: 2107454

Strand: Direct

Name: glcD [H]

Synonym: Rpic_1997

Alternate gene names: 187929077

Gene position: 2106042-2107454 (Clockwise)

Preceding gene: 187929076

Following gene: 187929079

Centisome position: 53.42

GC content: 64.61

Gene sequence:

>1413_bases
ATGATTCACAATGCCTTTCTTCAAGCCTGCGTTGAAGCTATCGGTGCAACGCACGTCCTGACTGCACCTGAAGACCAGGC
GCCTTATCTCACGGACTGGCGCAAGCGCTTTTCGGGGCGCGCACGCGCAGTGTTGCGCCCGGGGAGCGCAGACGAGGTGG
CGGCGCTCGTGCGCCTATGCGGCGAACACGGCGTGCCCATCGTCCCGCAAGGCGGCAACACCGGCTTGTGCGGCGGCGCC
ACGCCCGACATGAAAGGCGACGCGGTGGTGATCTCGTTGCAGCGCATGCAGCGCGTGCGCGCCGTCGACCCGATCAACAA
CACCATCACCGTGGATGCCGGCTGCATCTTGGCCAACGTGCAGCAGGCCGCCGCAGATGCCGACCGCCTCTTCCCGCTGA
GTCTGGCTGCAGAAGGCAGTTGCACAATCGGCGGCAATCTTGCGACCAATGCTGGCGGCACCGCGGTCCTGCGCTACGGC
AACGCGCGCGAATTGTGCCTCGGCATCGAAGCGGTGCTGCCCAACGGCGAACTGTGGAACGGCCTGCGCGGCCTTCGCAA
GGACAACACCGGCTACGACCTGCGTGACCTGCTGATCGGCGCGGAAGGCACGCTCGGCATCATCACTGGGGCGATGCTGA
AGCTGTTTCCGCAACCGCGCGCCAAGGTGACTGCGCTGGCGGCCCTGCAATCGCCGCGTCAGGCGCTGGCGTTTCTATCG
CTGGCGCAAGGCCATGCAGGAACGCTGCTGACGGGCTTCGAGCTGATGTCGGCGTTTTGCCTGGACCTCGTGCGCAAGCA
TTACCCGCAGTTGCGCGTGCCGTTCACGCAGGCGTATCCGCAATACGTGCTGCTGGAATTGTCCGATCTGGAAAGCGAAG
ACCACGCGCGCGCGCTGTTCGAATCGCTCATGGAAGACGCGCTCGCTCGCGGCGTGATCGACAATGCGGCGGTGGCGGAA
TCAGTGGCCCAGTCGCGCGACTTCTGGAACCTGCGCGAGCACATTCCGCTGGCGCAGGCCGATGAAGGCAAGAACATCAA
GCACGATATTGGCGTGCCCATTTCGCGCATTGCCGACTTCATTGACGTGACCGACCGCGCGCTGGCCGCGGCCTACCCCA
ACATCCGCATGGTGACGTTCGGCCATCTTGGCGATGGCAATCTGCACTACAACGTGTCGCCGCCGGAAGGCCATGCGCAC
GATGCTTTCCTGGCCAACCAGGACGGCATCAACCGCATCGTGCACGACAGCGTGCATGCGCACGGCGGCTCCATCTCAGC
CGAACACGGCATCGGCCAGCTCAAGCGCGAAGACAACGCGCGCTACAAGAGCCCCGTTGAACTGGCCGCCATGCGCGCGA
TCAAGCAGGCGCTGGACCCGCGCGGCCTGATGAATCCGGGGAAGGTGTTGTAA

Upstream 100 bases:

>100_bases
GGTGGTGCTCAGCGTGGTGTTCTTCACCGCAACCATCCTCTACCTGCGACCATTCAAGCGCGCGGCCAAAGCACGCGCCG
GCCACAGATCCTGATCCGCC

Downstream 100 bases:

>100_bases
GGCGATCCGGCCTTGCTTCAGCCGAACAGCTTCAGCGTGTAGTTCGCCACTGCGAAGAGGACTGTCGCGGCCAGCAGCCA
CAACAGCATGCGCGGTACTC

Product: FAD linked oxidase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MIHNAFLQACVEAIGATHVLTAPEDQAPYLTDWRKRFSGRARAVLRPGSADEVAALVRLCGEHGVPIVPQGGNTGLCGGA
TPDMKGDAVVISLQRMQRVRAVDPINNTITVDAGCILANVQQAAADADRLFPLSLAAEGSCTIGGNLATNAGGTAVLRYG
NARELCLGIEAVLPNGELWNGLRGLRKDNTGYDLRDLLIGAEGTLGIITGAMLKLFPQPRAKVTALAALQSPRQALAFLS
LAQGHAGTLLTGFELMSAFCLDLVRKHYPQLRVPFTQAYPQYVLLELSDLESEDHARALFESLMEDALARGVIDNAAVAE
SVAQSRDFWNLREHIPLAQADEGKNIKHDIGVPISRIADFIDVTDRALAAAYPNIRMVTFGHLGDGNLHYNVSPPEGHAH
DAFLANQDGINRIVHDSVHAHGGSISAEHGIGQLKREDNARYKSPVELAAMRAIKQALDPRGLMNPGKVL

Sequences:

>Translated_470_residues
MIHNAFLQACVEAIGATHVLTAPEDQAPYLTDWRKRFSGRARAVLRPGSADEVAALVRLCGEHGVPIVPQGGNTGLCGGA
TPDMKGDAVVISLQRMQRVRAVDPINNTITVDAGCILANVQQAAADADRLFPLSLAAEGSCTIGGNLATNAGGTAVLRYG
NARELCLGIEAVLPNGELWNGLRGLRKDNTGYDLRDLLIGAEGTLGIITGAMLKLFPQPRAKVTALAALQSPRQALAFLS
LAQGHAGTLLTGFELMSAFCLDLVRKHYPQLRVPFTQAYPQYVLLELSDLESEDHARALFESLMEDALARGVIDNAAVAE
SVAQSRDFWNLREHIPLAQADEGKNIKHDIGVPISRIADFIDVTDRALAAAYPNIRMVTFGHLGDGNLHYNVSPPEGHAH
DAFLANQDGINRIVHDSVHAHGGSISAEHGIGQLKREDNARYKSPVELAAMRAIKQALDPRGLMNPGKVL
>Mature_470_residues
MIHNAFLQACVEAIGATHVLTAPEDQAPYLTDWRKRFSGRARAVLRPGSADEVAALVRLCGEHGVPIVPQGGNTGLCGGA
TPDMKGDAVVISLQRMQRVRAVDPINNTITVDAGCILANVQQAAADADRLFPLSLAAEGSCTIGGNLATNAGGTAVLRYG
NARELCLGIEAVLPNGELWNGLRGLRKDNTGYDLRDLLIGAEGTLGIITGAMLKLFPQPRAKVTALAALQSPRQALAFLS
LAQGHAGTLLTGFELMSAFCLDLVRKHYPQLRVPFTQAYPQYVLLELSDLESEDHARALFESLMEDALARGVIDNAAVAE
SVAQSRDFWNLREHIPLAQADEGKNIKHDIGVPISRIADFIDVTDRALAAAYPNIRMVTFGHLGDGNLHYNVSPPEGHAH
DAFLANQDGINRIVHDSVHAHGGSISAEHGIGQLKREDNARYKSPVELAAMRAIKQALDPRGLMNPGKVL

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI119964728, Length=464, Percent_Identity=38.3620689655172, Blast_Score=290, Evalue=2e-78,
Organism=Homo sapiens, GI37595756, Length=477, Percent_Identity=31.2368972746331, Blast_Score=168, Evalue=1e-41,
Organism=Homo sapiens, GI37595754, Length=500, Percent_Identity=30, Blast_Score=159, Evalue=5e-39,
Organism=Homo sapiens, GI4501993, Length=198, Percent_Identity=30.3030303030303, Blast_Score=84, Evalue=4e-16,
Organism=Escherichia coli, GI1789351, Length=481, Percent_Identity=29.3139293139293, Blast_Score=152, Evalue=6e-38,
Organism=Escherichia coli, GI1787977, Length=505, Percent_Identity=25.3465346534653, Blast_Score=87, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17534361, Length=452, Percent_Identity=33.8495575221239, Blast_Score=268, Evalue=5e-72,
Organism=Caenorhabditis elegans, GI71992373, Length=448, Percent_Identity=26.1160714285714, Blast_Score=140, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI71992381, Length=448, Percent_Identity=26.3392857142857, Blast_Score=133, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI71992392, Length=417, Percent_Identity=26.378896882494, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17556096, Length=181, Percent_Identity=25.414364640884, Blast_Score=70, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6320023, Length=457, Percent_Identity=34.3544857768052, Blast_Score=316, Evalue=6e-87,
Organism=Saccharomyces cerevisiae, GI6320764, Length=456, Percent_Identity=32.8947368421053, Blast_Score=277, Evalue=3e-75,
Organism=Saccharomyces cerevisiae, GI6320027, Length=447, Percent_Identity=27.5167785234899, Blast_Score=157, Evalue=5e-39,
Organism=Drosophila melanogaster, GI18921117, Length=460, Percent_Identity=37.1739130434783, Blast_Score=289, Evalue=2e-78,
Organism=Drosophila melanogaster, GI24639277, Length=460, Percent_Identity=37.1739130434783, Blast_Score=289, Evalue=2e-78,
Organism=Drosophila melanogaster, GI24639275, Length=460, Percent_Identity=37.1739130434783, Blast_Score=289, Evalue=2e-78,
Organism=Drosophila melanogaster, GI24653753, Length=209, Percent_Identity=28.2296650717703, Blast_Score=84, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 50340; Mature: 50340

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHNAFLQACVEAIGATHVLTAPEDQAPYLTDWRKRFSGRARAVLRPGSADEVAALVRLC
CCCHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
GEHGVPIVPQGGNTGLCGGATPDMKGDAVVISLQRMQRVRAVDPINNTITVDAGCILANV
CCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCEEEEECCHHHHHH
QQAAADADRLFPLSLAAEGSCTIGGNLATNAGGTAVLRYGNARELCLGIEAVLPNGELWN
HHHHCCHHHCEEEEEECCCCEEECCCEECCCCCCEEEEECCCHHHHEEHHHCCCCCHHHH
GLRGLRKDNTGYDLRDLLIGAEGTLGIITGAMLKLFPQPRAKVTALAALQSPRQALAFLS
HHHHHCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHH
LAQGHAGTLLTGFELMSAFCLDLVRKHYPQLRVPFTQAYPQYVLLELSDLESEDHARALF
HHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCHHHCCCCEEEEEECCCCCCHHHHHHH
ESLMEDALARGVIDNAAVAESVAQSRDFWNLREHIPLAQADEGKNIKHDIGVPISRIADF
HHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCHHCCCCHHHHHHH
IDVTDRALAAAYPNIRMVTFGHLGDGNLHYNVSPPEGHAHDAFLANQDGINRIVHDSVHA
HHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCEECCCCHHHHHHHHHHHC
HGGSISAEHGIGQLKREDNARYKSPVELAAMRAIKQALDPRGLMNPGKVL
CCCCCCHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MIHNAFLQACVEAIGATHVLTAPEDQAPYLTDWRKRFSGRARAVLRPGSADEVAALVRLC
CCCHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
GEHGVPIVPQGGNTGLCGGATPDMKGDAVVISLQRMQRVRAVDPINNTITVDAGCILANV
CCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCEEEEECCHHHHHH
QQAAADADRLFPLSLAAEGSCTIGGNLATNAGGTAVLRYGNARELCLGIEAVLPNGELWN
HHHHCCHHHCEEEEEECCCCEEECCCEECCCCCCEEEEECCCHHHHEEHHHCCCCCHHHH
GLRGLRKDNTGYDLRDLLIGAEGTLGIITGAMLKLFPQPRAKVTALAALQSPRQALAFLS
HHHHHCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHH
LAQGHAGTLLTGFELMSAFCLDLVRKHYPQLRVPFTQAYPQYVLLELSDLESEDHARALF
HHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCHHHCCCCEEEEEECCCCCCHHHHHHH
ESLMEDALARGVIDNAAVAESVAQSRDFWNLREHIPLAQADEGKNIKHDIGVPISRIADF
HHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCHHCCCCHHHHHHH
IDVTDRALAAAYPNIRMVTFGHLGDGNLHYNVSPPEGHAHDAFLANQDGINRIVHDSVHA
HHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCEECCCCHHHHHHHHHHHC
HGGSISAEHGIGQLKREDNARYKSPVELAAMRAIKQALDPRGLMNPGKVL
CCCCCCHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]