Click here to switch to the map view.

The map label for this gene is rbn [C]

Identifier: 187929074

GI number: 187929074

Start: 2103653

End: 2104984

Strand: Reverse

Name: rbn [C]

Synonym: Rpic_1994

Alternate gene names: 187929074

Gene position: 2104984-2103653 (Counterclockwise)

Preceding gene: 187929078

Following gene: 187929070

Centisome position: 53.39

GC content: 62.99

Gene sequence:

>1332_bases
ATGCTTTTTGACACCCGTGCGCTTCGCAAATGGAATGCCGCCAAGCTGCGTGCGCTGGCGCGTTACGCCTTGCGCCGCGC
CGGTGAAGACCACCTGCCGCAAGTGGCTGGTAGCCTGACATTCACGACGGTGCTGTCGTTGGTTCCGATTTTGACGGTGG
CGTTTGCGCTGTTCACGGCATTCCCGATGTTCAAGAGCTTCCGGGCGGACATCGAAGGCTACATGTTCAGCAACCTCGTG
CCGGGCAGCATCAGTCGGCCGATCCTGACGTATCTGAATCAGTTTTCCACCAACGCCAAGGGGCTGACGGCAGCGGGCCT
GATCGGCCTGGTCGTGACGTCGGTAATGACATTGCTCACCGTCGAGAACGCATTGAACGCGATCTGGCGCGTGCGTCATC
GTCGGCCGCTGGCGCATCGCGTCCTGGTGTTCTGGGCGCTGATGACATTTGCGCCGGTGCTGATTGGCGCGAGCCTGTCG
GTCAGTTCGTACCTCGTGTCGATTTCGGCGGGCTATGTGCACAAGCTGCCGTTTGGTCTGGGCGTGATCGTCAGCCTGGT
CCCGATCCTGCTGTCGGCGATTGCATTTGCGATGCTCTACGTATTCGTGCCGAATACCAACGTGGAACGGCGCGATGCGT
TCATTGCCGGCCTGATTGCCGCCGGGGCATTTGAAATCGCCAAGCGCGTCTTTGGCGCTTACGTCGCGCATATCCCCACC
TACACGGCCGTCTACGGCGCGTTTGCCACGCTGCCGATCTTCCTGACGTGGATCTATGTGAGCTGGCTGGTGACGCTGCT
CGGTGCGACCATCGCCTCGACGCTGCCGATCATCCGGCAGGGCTACTGGCAGCGGCGCACATTTCCGGGCAGCGAGTTCT
TTGATGCGCTGGGTGTTCTGTTGCTGCTGTATCGCGCGCGAGAACAGGCGCCGCGTACGGTCGCCGAGCGCGATATTGGC
CGGCGCCTGCAGTTGGAAGCCGATTACCTGGTTGACCTGCTGACCAAGCTGAAGGCACTGCACCTGATCGGCAAGCTGCA
GCAGGATCGCGGTGAGACCCACTGGGCGCTGCTGTGCGATGTGCACACGACCACGCTGCGGCCGCTCTATGAAAGGCTGG
TGTTGAATCTGCCGCGCTTGCCGCGCACTGCCTTGGCGCGCCATCTGGGTGACACGCGCGCGCTGGTCAGCCAACTGCAG
AATCCCGCGCTCGACGCCACGCTCGAGAGCATTTTCACGACTGGCGAACGCGGGGTGGCGGCGGCTGCGCAGGCTGCTAT
GGCACCGGCGCCGGCTTCAGCAGTGCCCGCCGCTGCCAACGCGAGCGCCTGA

Upstream 100 bases:

>100_bases
CGGCTGTAGTACAGGACCAGGATATCTTTCATAACAAAGCGTGGAGAGCGTCGCGGTATTATAGTTGCGCCCCCCAACCC
CGCCTCCCGCCTCATTTTTC

Downstream 100 bases:

>100_bases
CGTTTCAGAACGGGATCTTGCCCGTCCAGATGTCGCGATACATCACCCAGTCACCCAGCAAGCTGTAGAAGGGGTGGCGG
AAGGTGGCGGGCCGGTTCTT

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MLFDTRALRKWNAAKLRALARYALRRAGEDHLPQVAGSLTFTTVLSLVPILTVAFALFTAFPMFKSFRADIEGYMFSNLV
PGSISRPILTYLNQFSTNAKGLTAAGLIGLVVTSVMTLLTVENALNAIWRVRHRRPLAHRVLVFWALMTFAPVLIGASLS
VSSYLVSISAGYVHKLPFGLGVIVSLVPILLSAIAFAMLYVFVPNTNVERRDAFIAGLIAAGAFEIAKRVFGAYVAHIPT
YTAVYGAFATLPIFLTWIYVSWLVTLLGATIASTLPIIRQGYWQRRTFPGSEFFDALGVLLLLYRAREQAPRTVAERDIG
RRLQLEADYLVDLLTKLKALHLIGKLQQDRGETHWALLCDVHTTTLRPLYERLVLNLPRLPRTALARHLGDTRALVSQLQ
NPALDATLESIFTTGERGVAAAAQAAMAPAPASAVPAAANASA

Sequences:

>Translated_443_residues
MLFDTRALRKWNAAKLRALARYALRRAGEDHLPQVAGSLTFTTVLSLVPILTVAFALFTAFPMFKSFRADIEGYMFSNLV
PGSISRPILTYLNQFSTNAKGLTAAGLIGLVVTSVMTLLTVENALNAIWRVRHRRPLAHRVLVFWALMTFAPVLIGASLS
VSSYLVSISAGYVHKLPFGLGVIVSLVPILLSAIAFAMLYVFVPNTNVERRDAFIAGLIAAGAFEIAKRVFGAYVAHIPT
YTAVYGAFATLPIFLTWIYVSWLVTLLGATIASTLPIIRQGYWQRRTFPGSEFFDALGVLLLLYRAREQAPRTVAERDIG
RRLQLEADYLVDLLTKLKALHLIGKLQQDRGETHWALLCDVHTTTLRPLYERLVLNLPRLPRTALARHLGDTRALVSQLQ
NPALDATLESIFTTGERGVAAAAQAAMAPAPASAVPAAANASA
>Mature_443_residues
MLFDTRALRKWNAAKLRALARYALRRAGEDHLPQVAGSLTFTTVLSLVPILTVAFALFTAFPMFKSFRADIEGYMFSNLV
PGSISRPILTYLNQFSTNAKGLTAAGLIGLVVTSVMTLLTVENALNAIWRVRHRRPLAHRVLVFWALMTFAPVLIGASLS
VSSYLVSISAGYVHKLPFGLGVIVSLVPILLSAIAFAMLYVFVPNTNVERRDAFIAGLIAAGAFEIAKRVFGAYVAHIPT
YTAVYGAFATLPIFLTWIYVSWLVTLLGATIASTLPIIRQGYWQRRTFPGSEFFDALGVLLLLYRAREQAPRTVAERDIG
RRLQLEADYLVDLLTKLKALHLIGKLQQDRGETHWALLCDVHTTTLRPLYERLVLNLPRLPRTALARHLGDTRALVSQLQ
NPALDATLESIFTTGERGVAAAAQAAMAPAPASAVPAAANASA

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=265, Percent_Identity=37.7358490566038, Blast_Score=199, Evalue=4e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 48456; Mature: 48456

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]