Click here to switch to the map view.

The map label for this gene is yoaB [C]

Identifier: 187929059

GI number: 187929059

Start: 2089746

End: 2090114

Strand: Reverse

Name: yoaB [C]

Synonym: Rpic_1979

Alternate gene names: 187929059

Gene position: 2090114-2089746 (Counterclockwise)

Preceding gene: 187929060

Following gene: 187929058

Centisome position: 53.01

GC content: 61.79

Gene sequence:

>369_bases
ATGAGCACTGAACTGAAGCGTTACAACGTCGAACATCGCTATTCCGACGCGGCCGTCTACAACGGCGTCGTCTACGTGGC
CGGCCAGGTGCCCGAGACCACGCTGGACGCCGGCATTGCCGAGCAGACGGCGGAAGTGCTCGCCATCATCGATCGCGTGC
TGGCCGCCAACGGCAGCGACAAGACGCGCATCCTGATGTGCCAGATCTTCCTCAAAGACATCGGCGAGATTGGTGAGATG
AACAAGGTGTGGGACCAGTGGGTCGCCGCTGATTCCAAGAACTCGCCGCCGCGCGCCACCGTTGAGGCCGCGCTGGCCAA
TCCGAAGTACCGTATCGAAATCGTCGTGACGGCCGCGCAGAAAAGCTGA

Upstream 100 bases:

>100_bases
GGGCCACGCGCCGACCTTCATCCAGCCAGATCAGGTGGCGATCGCCCGCAAGTTCTTCCTCGGTCAATGACCGTTTGTCT
GACCCCATTCGATTTGCAAG

Downstream 100 bases:

>100_bases
GCCCGTCGCGTCACAGCAGGACGCAAGCAGGACGCATCATGGAGAACAAGACCGAACGGCCGGCCGAGTTGCCCGGATCG
ACGGCAGAGCAGGTCGCTCG

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MSTELKRYNVEHRYSDAAVYNGVVYVAGQVPETTLDAGIAEQTAEVLAIIDRVLAANGSDKTRILMCQIFLKDIGEIGEM
NKVWDQWVAADSKNSPPRATVEAALANPKYRIEIVVTAAQKS

Sequences:

>Translated_122_residues
MSTELKRYNVEHRYSDAAVYNGVVYVAGQVPETTLDAGIAEQTAEVLAIIDRVLAANGSDKTRILMCQIFLKDIGEIGEM
NKVWDQWVAADSKNSPPRATVEAALANPKYRIEIVVTAAQKS
>Mature_121_residues
STELKRYNVEHRYSDAAVYNGVVYVAGQVPETTLDAGIAEQTAEVLAIIDRVLAANGSDKTRILMCQIFLKDIGEIGEMN
KVWDQWVAADSKNSPPRATVEAALANPKYRIEIVVTAAQKS

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=113, Percent_Identity=48.6725663716814, Blast_Score=99, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13383; Mature: 13252

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTELKRYNVEHRYSDAAVYNGVVYVAGQVPETTLDAGIAEQTAEVLAIIDRVLAANGSD
CCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCC
KTRILMCQIFLKDIGEIGEMNKVWDQWVAADSKNSPPRATVEAALANPKYRIEIVVTAAQ
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEEEEECC
KS
CC
>Mature Secondary Structure 
STELKRYNVEHRYSDAAVYNGVVYVAGQVPETTLDAGIAEQTAEVLAIIDRVLAANGSD
CCCCCCCCCCCCCCCHHHHCCEEEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCC
KTRILMCQIFLKDIGEIGEMNKVWDQWVAADSKNSPPRATVEAALANPKYRIEIVVTAAQ
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEEEEECC
KS
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA