Click here to switch to the map view.

The map label for this gene is ycgE [C]

Identifier: 187929050

GI number: 187929050

Start: 2079109

End: 2079540

Strand: Reverse

Name: ycgE [C]

Synonym: Rpic_1970

Alternate gene names: 187929050

Gene position: 2079540-2079109 (Counterclockwise)

Preceding gene: 187929051

Following gene: 187929049

Centisome position: 52.75

GC content: 61.81

Gene sequence:

>432_bases
ATGGCCGCCGATAAACACACGGAGCGGGTCAACCTGCCGCCGATTCCTGCCAAACGCTACTTCACCATTGGTGAGGTCAG
TGACTTGTGCGCTGTCAAGCCGCACGTGCTGCGCTACTGGGAGCAGGAGTTCACTCAGCTCAAGCCCGTCAAGCGGCGCG
GCAATCGGCGCTACTACCAGCATCATGAGGTGCTGCTGATCCGGCGTATTCGCGAGCTGCTGTACGAGCAGGGCTTCACG
ATCAATGGCGCGCGGAATCGGCTGGATGAGTTGCGGCATGGTACGGCGGCTGCGTCGCCGGTCGAGGCCGATGAGCCGGA
GATGGATGTTGCGGCATCGACGCCCGCTGCTGCAAGCGGTTCGGTTGACGTTCAGAGCTTGCGGCGTGCGTTGTCGGCCG
TGTTGGAATTGCTGCGTACCGACAAGCCATAA

Upstream 100 bases:

>100_bases
AGCCGCTGCCGGTCGACATCGGGTAATTCTGCTACGTGATTTCGTTCAGCCGCCGTCTGTTCAATCCGCCTCTTTCGCCA
GCCCTGTAGCTCAGCCCTGT

Downstream 100 bases:

>100_bases
GCCGATATTGCAGACAAGAAGCGCGCAGATAGAAACGAAAAAGCCCGCGTAACGTGATCCGTTACGCGGGCTTTTGTTTT
GGTCGGGGCGAGAGGATTTG

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator MerR Family; Transcriptional Regulator; Transcriptional Regulator MerR Family Protein; Transcription Regulator Protein; Regulatory Protein MerR; Transcriptional Regulator Merr Family; MerR Family Regulatory Protein; MerR-Family Transcriptional Regulator; TRANSCRIPTIONal REGULATOR MerR Family; MerR Family Regulatory Family; Trancriptional Regulator MerR Family; Transcriptional Regulator Protein; Bacterial Transferase Hexapeptide Repeat Protein; Transcriptional Regulator Domain-Containing Protein

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MAADKHTERVNLPPIPAKRYFTIGEVSDLCAVKPHVLRYWEQEFTQLKPVKRRGNRRYYQHHEVLLIRRIRELLYEQGFT
INGARNRLDELRHGTAAASPVEADEPEMDVAASTPAAASGSVDVQSLRRALSAVLELLRTDKP

Sequences:

>Translated_143_residues
MAADKHTERVNLPPIPAKRYFTIGEVSDLCAVKPHVLRYWEQEFTQLKPVKRRGNRRYYQHHEVLLIRRIRELLYEQGFT
INGARNRLDELRHGTAAASPVEADEPEMDVAASTPAAASGSVDVQSLRRALSAVLELLRTDKP
>Mature_142_residues
AADKHTERVNLPPIPAKRYFTIGEVSDLCAVKPHVLRYWEQEFTQLKPVKRRGNRRYYQHHEVLLIRRIRELLYEQGFTI
NGARNRLDELRHGTAAASPVEADEPEMDVAASTPAAASGSVDVQSLRRALSAVLELLRTDKP

Specific function: Unknown

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16258; Mature: 16127

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAADKHTERVNLPPIPAKRYFTIGEVSDLCAVKPHVLRYWEQEFTQLKPVKRRGNRRYYQ
CCCCCCCCCCCCCCCCCCCEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
HHEVLLIRRIRELLYEQGFTINGARNRLDELRHGTAAASPVEADEPEMDVAASTPAAASG
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SVDVQSLRRALSAVLELLRTDKP
CCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AADKHTERVNLPPIPAKRYFTIGEVSDLCAVKPHVLRYWEQEFTQLKPVKRRGNRRYYQ
CCCCCCCCCCCCCCCCCCEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
HHEVLLIRRIRELLYEQGFTINGARNRLDELRHGTAAASPVEADEPEMDVAASTPAAASG
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SVDVQSLRRALSAVLELLRTDKP
CCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA