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The map label for this gene is yagI [H]

Identifier: 187929016

GI number: 187929016

Start: 2042264

End: 2043061

Strand: Direct

Name: yagI [H]

Synonym: Rpic_1936

Alternate gene names: 187929016

Gene position: 2042264-2043061 (Clockwise)

Preceding gene: 187929011

Following gene: 187929022

Centisome position: 51.8

GC content: 64.04

Gene sequence:

>798_bases
ATGGCAGAAGCAGACAAGGACCCCGGCAAGACGTCTATCCAGGTCATCGAACGCATGATGATGCTGCTCGACGCGCTTGC
CGATCACGCCGATCCGGTCAGCCTGAAGGCGCTGTCGGCCAGCACCGGCCTGCACCCGTCCACCGCGCATCGCATCCTGA
ACGACATGGTGGCTTGCCGCTTCGTCGATCGCTCCGACCCGGGCAGCTACCGTCTCGGCATGCGTTTGCTCGAACTCGGC
AACCTGGTCAAGGCGCGCCTCTCGGTACGAGAAGCGGCGCTCGCGCCGATGCGCGCCCTGCACCGCCTGACGGGCCAGAC
CGTCAACCTCTCGGTGCGTCAGGGCGACGAGATCGTCTACATCGAGCGCGCCTATTCCGAGCGCTCTGGCATGCAAGTGG
TGCGCGCCATCGGTGGCCGCGCACCGCTGCATCTGACTTCGGTTGGCAAGTTGTTCCTGGCTGCTGACGAACTCGGCCGT
GTGCGCGCCTATGCGACACGCACGGGCTTGTCTGGCCACACCCGCACCTCCATCACGGATTTGCCCAAGCTTGAACGCGA
ACTCAACTGGGTGCGCACCAACGGCTACGCGCGTGACAACGAAGAACTGGAACTCGGCGTGCGCTGCATCGCTGCCGGCA
TCTATGATGATTCGCGCCGGCTGGTAGCAGGTCTGTCGCTGTCTGCACCGGCAGACCGGTTGCAGGACAGCTGGCTCGAC
AATCTCAAGGACACCGCGCTACAGATCTCCAAAGGCATGGGCTACACGTATGAAGAGGACGCCGTGCGCGCGGAGTGA

Upstream 100 bases:

>100_bases
GAGAAAGCCTTCGAAAATACACGGAATCATGCGTCGGGATGGTGCGCATTTTCACATCGTGGGATAGAATTTTGCATCGC
ATCCGCAACCCACTGCACCC

Downstream 100 bases:

>100_bases
GCCGCCGGTTTTGCTCAACAAAAAAGCGCGTCATCGAACGCGCTTTTTTGTTGGGTGATGCGGTGGCTCAGGCGCCGTGC
TGCTCCGACGCCAGCACGGT

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MAEADKDPGKTSIQVIERMMMLLDALADHADPVSLKALSASTGLHPSTAHRILNDMVACRFVDRSDPGSYRLGMRLLELG
NLVKARLSVREAALAPMRALHRLTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADELGR
VRAYATRTGLSGHTRTSITDLPKLERELNWVRTNGYARDNEELELGVRCIAAGIYDDSRRLVAGLSLSAPADRLQDSWLD
NLKDTALQISKGMGYTYEEDAVRAE

Sequences:

>Translated_265_residues
MAEADKDPGKTSIQVIERMMMLLDALADHADPVSLKALSASTGLHPSTAHRILNDMVACRFVDRSDPGSYRLGMRLLELG
NLVKARLSVREAALAPMRALHRLTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADELGR
VRAYATRTGLSGHTRTSITDLPKLERELNWVRTNGYARDNEELELGVRCIAAGIYDDSRRLVAGLSLSAPADRLQDSWLD
NLKDTALQISKGMGYTYEEDAVRAE
>Mature_264_residues
AEADKDPGKTSIQVIERMMMLLDALADHADPVSLKALSASTGLHPSTAHRILNDMVACRFVDRSDPGSYRLGMRLLELGN
LVKARLSVREAALAPMRALHRLTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADELGRV
RAYATRTGLSGHTRTSITDLPKLERELNWVRTNGYARDNEELELGVRCIAAGIYDDSRRLVAGLSLSAPADRLQDSWLDN
LKDTALQISKGMGYTYEEDAVRAE

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=253, Percent_Identity=34.7826086956522, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1789999, Length=268, Percent_Identity=32.4626865671642, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1788131, Length=261, Percent_Identity=32.5670498084291, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1786715, Length=246, Percent_Identity=32.520325203252, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI87082359, Length=253, Percent_Identity=28.4584980237154, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1790752, Length=222, Percent_Identity=30.1801801801802, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788581, Length=260, Percent_Identity=26.1538461538462, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 29161; Mature: 29030

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEADKDPGKTSIQVIERMMMLLDALADHADPVSLKALSASTGLHPSTAHRILNDMVACR
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
FVDRSDPGSYRLGMRLLELGNLVKARLSVREAALAPMRALHRLTGQTVNLSVRQGDEIVY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEE
IERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADELGRVRAYATRTGLSGHTRTSITD
EEECCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
LPKLERELNWVRTNGYARDNEELELGVRCIAAGIYDDSRRLVAGLSLSAPADRLQDSWLD
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHEECCCCCCCHHHHHHHHHH
NLKDTALQISKGMGYTYEEDAVRAE
HHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
AEADKDPGKTSIQVIERMMMLLDALADHADPVSLKALSASTGLHPSTAHRILNDMVACR
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
FVDRSDPGSYRLGMRLLELGNLVKARLSVREAALAPMRALHRLTGQTVNLSVRQGDEIVY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEE
IERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADELGRVRAYATRTGLSGHTRTSITD
EEECCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
LPKLERELNWVRTNGYARDNEELELGVRCIAAGIYDDSRRLVAGLSLSAPADRLQDSWLD
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHEECCCCCCCHHHHHHHHHH
NLKDTALQISKGMGYTYEEDAVRAE
HHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]