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The map label for this gene is yoaA [H]

Identifier: 187929001

GI number: 187929001

Start: 2026329

End: 2028506

Strand: Reverse

Name: yoaA [H]

Synonym: Rpic_1921

Alternate gene names: 187929001

Gene position: 2028506-2026329 (Counterclockwise)

Preceding gene: 187929002

Following gene: 187928999

Centisome position: 51.45

GC content: 64.28

Gene sequence:

>2178_bases
GTGCGGCCTCCGTCATTTGACCCCACGGATTCCGCGTTGACTTCGCTTTCCCCGCTGGCCGAGCCGTCGGCTGACTCCGA
CGCCGATGCCGGCGACGCTTCGGCTCCCGCTGCCTCTGTACCCGCCGATGCCCATCATGCCGAACTGTCGACGCTGTTCG
CCGACGACGGTACGCTCGCCAAGGGTATCGAGGGGTACCGGCCCCGCAGTGCGCAGCTGACGATGGCGCAGGCCGTGGCC
AACGCCATCGAAGCCGCCGATTCGATCATCGTCGAGGCCGGGACCGGCACGGGCAAAACGTACGCCTACCTTGTTCCCGC
GATGCTTTGGGGCGGCAAGGTGATCGTCTCCACCGGGACGAAGAACCTGCAGGACCAGCTTTTCCTGCGCGACATCCCGA
CGGTGCGCAAGGCGCTCAATGCACCGGTGTCGGTGGCGTTGCTCAAGGGGCGCGCCAACTATGTCTGCCATTACCACGTG
GAGCGCGCGTCGCAGAACGGACGTCTCTTTTCGCGCCAGGACGCCGCGTGGCTGCGCCAGATCAACCTGTTCCTGAAGAC
GACGAAAACGGGCGACAAAGCCGAACTTGCCAGCGTGCCCGAGAACGCACCGGTGTGGAATCTCGTCACCTCCACGCGCG
ACAATTGCCTGGGTTCGGACTGCGCGTATTACAAAGACTGCTTCGTCATGCGCGCCCGCAAGGAGGCGCAGCAGGCCGAC
GTGGTGGTGGTGAACCATCACCTGTTCTTTGCAGACGTGATGTTGAAGGACACCGGCATGGCGGAGTTGCTGCCCGCCGC
CAACACGATCATCTTCGACGAAGCGCACCAGCTGCCAGAAACCGCCACGTTGTTCTTTGGCGAGACCATCTCCACGAACC
AGATTCTCGAACTCGCACGCGACAGCGTGGCCGAAGGCCTTTCGCACGCACGCGATGCGGTGGATTGGGTCGCGATTGCC
GCGCCGCTGGAGCGTGCCGCGCGTGATCTGCGCCTGGTCTTCCGCCAGGATGGCTCCCGCCTGTCGATCAAGCAGATCGA
CAATGATGCAGCCCTCGCCAAGCCGTTCTACGAGGTACTGCCGAAGCTGGAGCAGGCGCTCTCCGACTTTACCGGCGCGC
TGGAGGCCCAGGCGGAACGCGCGGAGACCATCGAGCAATGCCATCGCCGCGCCGTGGCGCTGTGCGAGAAGCTTGAGGCG
TGGGTCGATCCCAAGCCTCCAAAGGCGCCAAAGAAGGAAGGTGACGACGAGGGCAAGGAGGGCGGAAGCGCGGCGGCTGT
CGACGAACGTGTGCGCTGGGTCGAGGTATTCGCCAACTCCGTGCAATTGCATCTGACGCCATTGTCGATCGCGCCGATTT
TTTCCCGCCAGCGTGCCGGCCAGCCGCGCGCGTGGGTCTTCACCTCGGCTACGCTGTCGGTGCGCGGGAACTTCACGCAC
TATGCCGCGCAGTTGGGCCTGGATCGTGATCGATCAATGACGCTCGACAGCCCGTTCGACTATGCATCGCAAGGCTTGCT
CTATGTGCCGCGCGATCTGCCGCAGCCGAGCGATCCGCGCTTTACCGATGCGGTGCTCGACGCTACCTTGCCGCTCATTG
AAGCAGCGGGTGGCAAGACGTTCTTGCTATGCACGACGCTGCGCGCCGTCAACCGTGCGGCCGAACGATTGACGGATGAA
TTCGCGCAACGCGGTTGGGATTTCCCGCTGCTCGTGCAAGGTCAGGCCAGCCGGACGGAACTGCTGGACCGTTTCCGCAC
GCTCGGCAACGCCGTGCTGGTCGGTAGCCAGAGTTTCTGGGAGGGTGTGGACGTACGCGGCGAGGCGCTCTCGCTGGTCG
TGATCGACAAATTGCCGTTTGCCCCGCCCGATGATCCGGTGCTGAGTGCCCGCATGGAGGCGCTGGAGAAAAAGGGGCTG
AGCCCGTTTGCCGTCCACCAGTTGCCGCACGCGGTCATCACGCTCAAGCAGGGGGCGGGGCGGTTGATTCGCTCGGAGAC
CGATCGCGGCGTGCTGATGATCTGCGACCCGCGGCTGGTTGAGAAAAACTACGGTCGCCAGATCTGGCAAAGCCTGCCAC
CCTTCAAGCGTACGCGCGAGGCCGAGACGGCTGCCGAATTCCTTCGTTCCCTGCGGGCGGATTCGGATGAGCAGCCCACG
GGCGGCTCTGAAGACTGA

Upstream 100 bases:

>100_bases
GGACACCATCACCCTGCTACAGTTGCAGCTTGAGCCGGACGTGCCGGCCTAGCGCCCGCCCGAACTTGGTTCGATTTTCA
TCCCGAGAGGCCGCAATCAC

Downstream 100 bases:

>100_bases
CCCGCACGCACAAACAAAAAGCCCGGCCAATCGACCGGGCTTTTTGCTGTGCTGTGCGAACCTTGCTCACCACCATTGGT
ACCAGGGCTTGTCTTTCTTG

Product: helicase c2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 725; Mature: 725

Protein sequence:

>725_residues
MRPPSFDPTDSALTSLSPLAEPSADSDADAGDASAPAASVPADAHHAELSTLFADDGTLAKGIEGYRPRSAQLTMAQAVA
NAIEAADSIIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKNLQDQLFLRDIPTVRKALNAPVSVALLKGRANYVCHYHV
ERASQNGRLFSRQDAAWLRQINLFLKTTKTGDKAELASVPENAPVWNLVTSTRDNCLGSDCAYYKDCFVMRARKEAQQAD
VVVVNHHLFFADVMLKDTGMAELLPAANTIIFDEAHQLPETATLFFGETISTNQILELARDSVAEGLSHARDAVDWVAIA
APLERAARDLRLVFRQDGSRLSIKQIDNDAALAKPFYEVLPKLEQALSDFTGALEAQAERAETIEQCHRRAVALCEKLEA
WVDPKPPKAPKKEGDDEGKEGGSAAAVDERVRWVEVFANSVQLHLTPLSIAPIFSRQRAGQPRAWVFTSATLSVRGNFTH
YAAQLGLDRDRSMTLDSPFDYASQGLLYVPRDLPQPSDPRFTDAVLDATLPLIEAAGGKTFLLCTTLRAVNRAAERLTDE
FAQRGWDFPLLVQGQASRTELLDRFRTLGNAVLVGSQSFWEGVDVRGEALSLVVIDKLPFAPPDDPVLSARMEALEKKGL
SPFAVHQLPHAVITLKQGAGRLIRSETDRGVLMICDPRLVEKNYGRQIWQSLPPFKRTREAETAAEFLRSLRADSDEQPT
GGSED

Sequences:

>Translated_725_residues
MRPPSFDPTDSALTSLSPLAEPSADSDADAGDASAPAASVPADAHHAELSTLFADDGTLAKGIEGYRPRSAQLTMAQAVA
NAIEAADSIIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKNLQDQLFLRDIPTVRKALNAPVSVALLKGRANYVCHYHV
ERASQNGRLFSRQDAAWLRQINLFLKTTKTGDKAELASVPENAPVWNLVTSTRDNCLGSDCAYYKDCFVMRARKEAQQAD
VVVVNHHLFFADVMLKDTGMAELLPAANTIIFDEAHQLPETATLFFGETISTNQILELARDSVAEGLSHARDAVDWVAIA
APLERAARDLRLVFRQDGSRLSIKQIDNDAALAKPFYEVLPKLEQALSDFTGALEAQAERAETIEQCHRRAVALCEKLEA
WVDPKPPKAPKKEGDDEGKEGGSAAAVDERVRWVEVFANSVQLHLTPLSIAPIFSRQRAGQPRAWVFTSATLSVRGNFTH
YAAQLGLDRDRSMTLDSPFDYASQGLLYVPRDLPQPSDPRFTDAVLDATLPLIEAAGGKTFLLCTTLRAVNRAAERLTDE
FAQRGWDFPLLVQGQASRTELLDRFRTLGNAVLVGSQSFWEGVDVRGEALSLVVIDKLPFAPPDDPVLSARMEALEKKGL
SPFAVHQLPHAVITLKQGAGRLIRSETDRGVLMICDPRLVEKNYGRQIWQSLPPFKRTREAETAAEFLRSLRADSDEQPT
GGSED
>Mature_725_residues
MRPPSFDPTDSALTSLSPLAEPSADSDADAGDASAPAASVPADAHHAELSTLFADDGTLAKGIEGYRPRSAQLTMAQAVA
NAIEAADSIIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKNLQDQLFLRDIPTVRKALNAPVSVALLKGRANYVCHYHV
ERASQNGRLFSRQDAAWLRQINLFLKTTKTGDKAELASVPENAPVWNLVTSTRDNCLGSDCAYYKDCFVMRARKEAQQAD
VVVVNHHLFFADVMLKDTGMAELLPAANTIIFDEAHQLPETATLFFGETISTNQILELARDSVAEGLSHARDAVDWVAIA
APLERAARDLRLVFRQDGSRLSIKQIDNDAALAKPFYEVLPKLEQALSDFTGALEAQAERAETIEQCHRRAVALCEKLEA
WVDPKPPKAPKKEGDDEGKEGGSAAAVDERVRWVEVFANSVQLHLTPLSIAPIFSRQRAGQPRAWVFTSATLSVRGNFTH
YAAQLGLDRDRSMTLDSPFDYASQGLLYVPRDLPQPSDPRFTDAVLDATLPLIEAAGGKTFLLCTTLRAVNRAAERLTDE
FAQRGWDFPLLVQGQASRTELLDRFRTLGNAVLVGSQSFWEGVDVRGEALSLVVIDKLPFAPPDDPVLSARMEALEKKGL
SPFAVHQLPHAVITLKQGAGRLIRSETDRGVLMICDPRLVEKNYGRQIWQSLPPFKRTREAETAAEFLRSLRADSDEQPT
GGSED

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=656, Percent_Identity=44.0548780487805, Blast_Score=521, Evalue=1e-149,
Organism=Escherichia coli, GI1787018, Length=715, Percent_Identity=27.8321678321678, Blast_Score=187, Evalue=2e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR006935 [H]

Pfam domain/function: PF06733 DEAD_2; PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 79191; Mature: 79191

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPPSFDPTDSALTSLSPLAEPSADSDADAGDASAPAASVPADAHHAELSTLFADDGTLA
CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHH
KGIEGYRPRSAQLTMAQAVANAIEAADSIIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGT
HCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHCCEEEEECCC
KNLQDQLFLRDIPTVRKALNAPVSVALLKGRANYVCHYHVERASQNGRLFSRQDAAWLRQ
CCHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCEEEEEEEECCCCCCCEECCHHHHHHHH
INLFLKTTKTGDKAELASVPENAPVWNLVTSTRDNCLGSDCAYYKDCFVMRARKEAQQAD
HHHHEEECCCCCHHHHHCCCCCCCEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
VVVVNHHLFFADVMLKDTGMAELLPAANTIIFDEAHQLPETATLFFGETISTNQILELAR
EEEEECCEEEEHHHHHCCCHHHHHCCCCEEEECCHHCCCCCEEEEECCCCCHHHHHHHHH
DSVAEGLSHARDAVDWVAIAAPLERAARDLRLVFRQDGSRLSIKQIDNDAALAKPFYEVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHH
PKLEQALSDFTGALEAQAERAETIEQCHRRAVALCEKLEAWVDPKPPKAPKKEGDDEGKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
GGSAAAVDERVRWVEVFANSVQLHLTPLSIAPIFSRQRAGQPRAWVFTSATLSVRGNFTH
CCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCEEEEEEEEEEECCCHHH
YAAQLGLDRDRSMTLDSPFDYASQGLLYVPRDLPQPSDPRFTDAVLDATLPLIEAAGGKT
HHHHHCCCCCCCCCCCCCCCHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCE
FLLCTTLRAVNRAAERLTDEFAQRGWDFPLLVQGQASRTELLDRFRTLGNAVLVGSQSFW
EEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCEEEECCHHHH
EGVDVRGEALSLVVIDKLPFAPPDDPVLSARMEALEKKGLSPFAVHQLPHAVITLKQGAG
CCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCHHEEEEECCCC
RLIRSETDRGVLMICDPRLVEKNYGRQIWQSLPPFKRTREAETAAEFLRSLRADSDEQPT
HHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
GGSED
CCCCC
>Mature Secondary Structure
MRPPSFDPTDSALTSLSPLAEPSADSDADAGDASAPAASVPADAHHAELSTLFADDGTLA
CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHH
KGIEGYRPRSAQLTMAQAVANAIEAADSIIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGT
HCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHCCEEEEECCC
KNLQDQLFLRDIPTVRKALNAPVSVALLKGRANYVCHYHVERASQNGRLFSRQDAAWLRQ
CCHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCEEEEEEEECCCCCCCEECCHHHHHHHH
INLFLKTTKTGDKAELASVPENAPVWNLVTSTRDNCLGSDCAYYKDCFVMRARKEAQQAD
HHHHEEECCCCCHHHHHCCCCCCCEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
VVVVNHHLFFADVMLKDTGMAELLPAANTIIFDEAHQLPETATLFFGETISTNQILELAR
EEEEECCEEEEHHHHHCCCHHHHHCCCCEEEECCHHCCCCCEEEEECCCCCHHHHHHHHH
DSVAEGLSHARDAVDWVAIAAPLERAARDLRLVFRQDGSRLSIKQIDNDAALAKPFYEVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHH
PKLEQALSDFTGALEAQAERAETIEQCHRRAVALCEKLEAWVDPKPPKAPKKEGDDEGKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
GGSAAAVDERVRWVEVFANSVQLHLTPLSIAPIFSRQRAGQPRAWVFTSATLSVRGNFTH
CCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCEEEEEEEEEEECCCHHH
YAAQLGLDRDRSMTLDSPFDYASQGLLYVPRDLPQPSDPRFTDAVLDATLPLIEAAGGKT
HHHHHCCCCCCCCCCCCCCCHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCE
FLLCTTLRAVNRAAERLTDEFAQRGWDFPLLVQGQASRTELLDRFRTLGNAVLVGSQSFW
EEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCEEEECCHHHH
EGVDVRGEALSLVVIDKLPFAPPDDPVLSARMEALEKKGLSPFAVHQLPHAVITLKQGAG
CCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCHHEEEEECCCC
RLIRSETDRGVLMICDPRLVEKNYGRQIWQSLPPFKRTREAETAAEFLRSLRADSDEQPT
HHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
GGSED
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]