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The map label for this gene is ahpD [H]

Identifier: 187928981

GI number: 187928981

Start: 2003423

End: 2003944

Strand: Direct

Name: ahpD [H]

Synonym: Rpic_1901

Alternate gene names: 187928981

Gene position: 2003423-2003944 (Clockwise)

Preceding gene: 187928980

Following gene: 187928984

Centisome position: 50.82

GC content: 61.3

Gene sequence:

>522_bases
ATGGAATTTCTGCAGACGATCAAGGGTCGGATTCCCGACTACGCCAAGGACATCCGCCTGAATCTGGATGGCACGATCGC
GCGCTCCTCGCTGGAGGGCAATGATGCCGTGGGCGTCGCGCTGGCGGCCGCTTTTGCCACGAAGAGCAAGGTGCTGACCG
ACGCCATCCGCAATGCCGGGGTGCTATCCCCCGAGGAGGTGAACGGCGCGCTGACCGCCGCCGCCCTCATGGGCATGAAC
AACGTCTGGTATCCGTACGTCGAGATGGCCGACGACTCTGACCTCGCGCAGCAGAAAGCGGAGTTGCGCATGAACGCCTA
CGCCAACAACGGCGGCGTCGACAAACGCCGGTTCGAGATGTATGCCCTGGCCGCGTCCATCATCGGCAAATGCCATTTCT
GCATTAAATCGCACTACGACTTGCTGAAGAATCACCAGGGCATGAGCGCGCAGCAATTGCGCGACGTTGGTCGCATTGCG
GCTGTCATCAACGCGGCAGCGCAAGTCATCGCGGCCGAATAG

Upstream 100 bases:

>100_bases
TCGGCGGTGCGACGCTGTAACGGCCACGCGGCGCCCTCCGAAGCCGAAGCCCGCCCCTGCGCGGGCTTTCTTTTTCAGCC
GCCGCTGACAGGAGACATCG

Downstream 100 bases:

>100_bases
CCGCACCAGTTCAGCAAACGAAAACGGCAGCCCGGATCGCTCCGGTGCTGCCGCTTGCCTCCGCGTGATGGCGACGCGGA
CTTAGTCCTGCTCGGCGGCT

Product: Carboxymuconolactone decarboxylase

Products: NA

Alternate protein names: Alkylhydroperoxidase AhpD [H]

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MEFLQTIKGRIPDYAKDIRLNLDGTIARSSLEGNDAVGVALAAAFATKSKVLTDAIRNAGVLSPEEVNGALTAAALMGMN
NVWYPYVEMADDSDLAQQKAELRMNAYANNGGVDKRRFEMYALAASIIGKCHFCIKSHYDLLKNHQGMSAQQLRDVGRIA
AVINAAAQVIAAE

Sequences:

>Translated_173_residues
MEFLQTIKGRIPDYAKDIRLNLDGTIARSSLEGNDAVGVALAAAFATKSKVLTDAIRNAGVLSPEEVNGALTAAALMGMN
NVWYPYVEMADDSDLAQQKAELRMNAYANNGGVDKRRFEMYALAASIIGKCHFCIKSHYDLLKNHQGMSAQQLRDVGRIA
AVINAAAQVIAAE
>Mature_173_residues
MEFLQTIKGRIPDYAKDIRLNLDGTIARSSLEGNDAVGVALAAAFATKSKVLTDAIRNAGVLSPEEVNGALTAAALMGMN
NVWYPYVEMADDSDLAQQKAELRMNAYANNGGVDKRRFEMYALAASIIGKCHFCIKSHYDLLKNHQGMSAQQLRDVGRIA
AVINAAAQVIAAE

Specific function: Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity [H]

COG id: COG2128

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AhpD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004674
- InterPro:   IPR004675
- InterPro:   IPR003779 [H]

Pfam domain/function: PF02627 CMD [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 18662; Mature: 18662

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFLQTIKGRIPDYAKDIRLNLDGTIARSSLEGNDAVGVALAAAFATKSKVLTDAIRNAG
CHHHHHHHCCCCCCHHHEEECCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
VLSPEEVNGALTAAALMGMNNVWYPYVEMADDSDLAQQKAELRMNAYANNGGVDKRRFEM
CCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH
YALAASIIGKCHFCIKSHYDLLKNHQGMSAQQLRDVGRIAAVINAAAQVIAAE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEFLQTIKGRIPDYAKDIRLNLDGTIARSSLEGNDAVGVALAAAFATKSKVLTDAIRNAG
CHHHHHHHCCCCCCHHHEEECCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
VLSPEEVNGALTAAALMGMNNVWYPYVEMADDSDLAQQKAELRMNAYANNGGVDKRRFEM
CCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH
YALAASIIGKCHFCIKSHYDLLKNHQGMSAQQLRDVGRIAAVINAAAQVIAAE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA