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The map label for this gene is crtB [H]

Identifier: 187928974

GI number: 187928974

Start: 1996016

End: 1996849

Strand: Direct

Name: crtB [H]

Synonym: Rpic_1894

Alternate gene names: 187928974

Gene position: 1996016-1996849 (Clockwise)

Preceding gene: 187928965

Following gene: 187928978

Centisome position: 50.63

GC content: 66.19

Gene sequence:

>834_bases
GTGACCCCCGACAATTACTGCGCCGACAAAGCGGCACCGCCCGGCAGCGACGTGTACTACAGCGTATTGTTTCTGGCGCC
CGAACGCCGCCGCGCGACCATCGCGCTGGAAGCCGTGCGCCGTGAGCTGGAAGACGCCGTACGCGACGCGAGCGATCCGG
CGGTCGTGCAATCGAAGCTGCAGTGGTGGCGGCAGGAGCTTGCGCGGCTGTTCGAGGGCCGCCCTGAGCACCCCGCGGCG
AAGGCATTGCAGCCGCATCTGGCCCGCTACGATATAGGCGCCGTGCATCTGGGCGAATTATTGGCCGGCGTAGAGGCTGA
CGCCATGCAAAACCGCTATCTGGATTGGCCCAACCTGCGCCGCCACGGCGATCAGGTGGCGGGCGTGGCAGGCCGGCTGA
CGGCTCGCATTGCCGGACAGACGCATGCGCGCACGCTGGAATTCGCGCGGCTGATGGCACTCGCCGAGCAGCTCGTTCAT
TTCGTCAGGAACCTGGGCGAAGACGTGCGCCATAACCGCGTCTACATCCCCGTGGACGAGCTGCAGCGGTTCAACGTACC
CGCCGCCGATCTGTTCAATCGCCGGTATGCAGAGGGCTTTAAGCCGTTGATGGCATTTCAGGCCGAGCGTGCCCGCGCGA
CCTACAAGGAAGCACTTGCCGCGCTGCCGGCAGAAGATCGCCGCGCGCAGCGTTCAGCGCTGATTCGCGGCGTGCTGGCC
ATGCGCCTGATCGACGAGGTGGAAGCCGACGGCTTCCAGGTGCTCACGCAGCGTACGGACCTGACGCCGCTGCGCAAGCT
CTGGCTGGCCTGGAAGACGCAGATCCGCGGTTGA

Upstream 100 bases:

>100_bases
TTTTCTTGGCAGATGCCCAGGCAAGGCTTCACGGCATGCTGCACCGCAACGCGCTGTAGAATGGCCGCCCTGCTTCAAAC
CTCACCAGAACGGCCTCCCC

Downstream 100 bases:

>100_bases
TCAGGCTTTGATCAGATCCAGCGGCGCAAACCGCCCTGCCAGCACCGGCTGCGAATCCATCCCCCACCAGCGCTCCAGCA
CCGTGGCATAAAGCGAGCGG

Product: squalene synthase HpnD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MTPDNYCADKAAPPGSDVYYSVLFLAPERRRATIALEAVRRELEDAVRDASDPAVVQSKLQWWRQELARLFEGRPEHPAA
KALQPHLARYDIGAVHLGELLAGVEADAMQNRYLDWPNLRRHGDQVAGVAGRLTARIAGQTHARTLEFARLMALAEQLVH
FVRNLGEDVRHNRVYIPVDELQRFNVPAADLFNRRYAEGFKPLMAFQAERARATYKEALAALPAEDRRAQRSALIRGVLA
MRLIDEVEADGFQVLTQRTDLTPLRKLWLAWKTQIRG

Sequences:

>Translated_277_residues
MTPDNYCADKAAPPGSDVYYSVLFLAPERRRATIALEAVRRELEDAVRDASDPAVVQSKLQWWRQELARLFEGRPEHPAA
KALQPHLARYDIGAVHLGELLAGVEADAMQNRYLDWPNLRRHGDQVAGVAGRLTARIAGQTHARTLEFARLMALAEQLVH
FVRNLGEDVRHNRVYIPVDELQRFNVPAADLFNRRYAEGFKPLMAFQAERARATYKEALAALPAEDRRAQRSALIRGVLA
MRLIDEVEADGFQVLTQRTDLTPLRKLWLAWKTQIRG
>Mature_276_residues
TPDNYCADKAAPPGSDVYYSVLFLAPERRRATIALEAVRRELEDAVRDASDPAVVQSKLQWWRQELARLFEGRPEHPAAK
ALQPHLARYDIGAVHLGELLAGVEADAMQNRYLDWPNLRRHGDQVAGVAGRLTARIAGQTHARTLEFARLMALAEQLVHF
VRNLGEDVRHNRVYIPVDELQRFNVPAADLFNRRYAEGFKPLMAFQAERARATYKEALAALPAEDRRAQRSALIRGVLAM
RLIDEVEADGFQVLTQRTDLTPLRKLWLAWKTQIRG

Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR019845
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: =2.5.1.32 [H]

Molecular weight: Translated: 31423; Mature: 31292

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPDNYCADKAAPPGSDVYYSVLFLAPERRRATIALEAVRRELEDAVRDASDPAVVQSKL
CCCCCCCCCCCCCCCCHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
QWWRQELARLFEGRPEHPAAKALQPHLARYDIGAVHLGELLAGVEADAMQNRYLDWPNLR
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHCCCCCCHHH
RHGDQVAGVAGRLTARIAGQTHARTLEFARLMALAEQLVHFVRNLGEDVRHNRVYIPVDE
HCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEHHH
LQRFNVPAADLFNRRYAEGFKPLMAFQAERARATYKEALAALPAEDRRAQRSALIRGVLA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
MRLIDEVEADGFQVLTQRTDLTPLRKLWLAWKTQIRG
HHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TPDNYCADKAAPPGSDVYYSVLFLAPERRRATIALEAVRRELEDAVRDASDPAVVQSKL
CCCCCCCCCCCCCCCHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
QWWRQELARLFEGRPEHPAAKALQPHLARYDIGAVHLGELLAGVEADAMQNRYLDWPNLR
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHCCCCCCHHH
RHGDQVAGVAGRLTARIAGQTHARTLEFARLMALAEQLVHFVRNLGEDVRHNRVYIPVDE
HCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEHHH
LQRFNVPAADLFNRRYAEGFKPLMAFQAERARATYKEALAALPAEDRRAQRSALIRGVLA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
MRLIDEVEADGFQVLTQRTDLTPLRKLWLAWKTQIRG
HHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA