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The map label for this gene is ywbI [H]

Identifier: 187928964

GI number: 187928964

Start: 1984213

End: 1985142

Strand: Direct

Name: ywbI [H]

Synonym: Rpic_1883

Alternate gene names: 187928964

Gene position: 1984213-1985142 (Clockwise)

Preceding gene: 187928960

Following gene: 187928965

Centisome position: 50.33

GC content: 59.46

Gene sequence:

>930_bases
ATGAAACTGGATCCGCAATCACTTCGCCTGTTTATCAGCGTGCTTGAGGAAGGCACCATTGCGGCTGCCTCGCAGCGCGA
ACACATTGCCGCGGCCGCCGTGAGTCGCCGGCTCAGCGAGCTGGAGTCGCTTCTGGGATCGCAACTCCTGATTCGCAGCA
ATAAGGGCATCGAACCTACCGAAGCCGGAACGGCGCTGATGTACATGGCGCGCGGTGTCCTGAACGACCTCAGCGGCATC
GTCTCGGAGATGCGGGAGTACTCGCATGGCAAGCGGGGATCGGTTCGCCTGCTCGCCAATATTTCCGCGATTACCCAGTT
TTTGCCCGCACTCCTGAAATCGTTCATGGAAAAGCACCCGAATATCCGGGTGACCCTTGAACAGATGGAGAGCCTCGCGA
TCACGCGGAGCGTCGCCGAAAGCCGTGCCGATATTGGGCTCTTTACGCGCATGCCGCATGAGGCCAGCGTCGAGATCCAC
CCCTTTCGCACCGACGAACTCGTGGTCTTGCTTCAAGCGGATCACCCGCTTGCGGACCGCGCCAGCGTTTGCTTCGATGA
AGTACTTGATTTCGACGTTGTGTCCCTGCACGGCGGGACACACCTGCACTACCAGATGCTGCAGGCCGCAAACGAATCCG
GCCGCACATTCTCGCCGCGGATGGAGGTATCCAGTTACGATGCGCTCTGTTTAATGGTGCAGACCGGCATGGGCATCGGC
ATATTGCCAAAGGGCAGTACCAGCGCGTATAGCATGCCGGAAATGAAGATCCTGCGTCTGGACGAACCGTGGGCCCAGCG
AGAACTATCGATGTGCGTGCGCAACGTGGAAACACTGACACCGGCGGCACGGCTCCTGTTCGATCACCTTCAGCGCGAGC
AATCTGCTGAAATACCGGCAGTGAATGGCACCGCGGCGACGTCCTCCTAG

Upstream 100 bases:

>100_bases
TAGAAGCCCAACCAATGTTGGTACATCAATCATTCGCGAGCTCACCATCGCAGATTGCGATGGTGCTTCAGCAGCCAGGG
CCACTGGATCACGCACGCCA

Downstream 100 bases:

>100_bases
ATGAAGCCGCCGTGCAAGCTGTCCGGTCAATGGCGTGCGCGCCTTTCAAAGACCCGAAGACCAGTCAACCAACCCACACA
CCCTTCTCCAGACTGTTCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MKLDPQSLRLFISVLEEGTIAAASQREHIAAAAVSRRLSELESLLGSQLLIRSNKGIEPTEAGTALMYMARGVLNDLSGI
VSEMREYSHGKRGSVRLLANISAITQFLPALLKSFMEKHPNIRVTLEQMESLAITRSVAESRADIGLFTRMPHEASVEIH
PFRTDELVVLLQADHPLADRASVCFDEVLDFDVVSLHGGTHLHYQMLQAANESGRTFSPRMEVSSYDALCLMVQTGMGIG
ILPKGSTSAYSMPEMKILRLDEPWAQRELSMCVRNVETLTPAARLLFDHLQREQSAEIPAVNGTAATSS

Sequences:

>Translated_309_residues
MKLDPQSLRLFISVLEEGTIAAASQREHIAAAAVSRRLSELESLLGSQLLIRSNKGIEPTEAGTALMYMARGVLNDLSGI
VSEMREYSHGKRGSVRLLANISAITQFLPALLKSFMEKHPNIRVTLEQMESLAITRSVAESRADIGLFTRMPHEASVEIH
PFRTDELVVLLQADHPLADRASVCFDEVLDFDVVSLHGGTHLHYQMLQAANESGRTFSPRMEVSSYDALCLMVQTGMGIG
ILPKGSTSAYSMPEMKILRLDEPWAQRELSMCVRNVETLTPAARLLFDHLQREQSAEIPAVNGTAATSS
>Mature_309_residues
MKLDPQSLRLFISVLEEGTIAAASQREHIAAAAVSRRLSELESLLGSQLLIRSNKGIEPTEAGTALMYMARGVLNDLSGI
VSEMREYSHGKRGSVRLLANISAITQFLPALLKSFMEKHPNIRVTLEQMESLAITRSVAESRADIGLFTRMPHEASVEIH
PFRTDELVVLLQADHPLADRASVCFDEVLDFDVVSLHGGTHLHYQMLQAANESGRTFSPRMEVSSYDALCLMVQTGMGIG
ILPKGSTSAYSMPEMKILRLDEPWAQRELSMCVRNVETLTPAARLLFDHLQREQSAEIPAVNGTAATSS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=287, Percent_Identity=24.390243902439, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787530, Length=267, Percent_Identity=25.0936329588015, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787879, Length=299, Percent_Identity=25.4180602006689, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI157672245, Length=291, Percent_Identity=23.0240549828179, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789204, Length=240, Percent_Identity=26.25, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1786401, Length=175, Percent_Identity=26.2857142857143, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787601, Length=186, Percent_Identity=22.0430107526882, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788481, Length=272, Percent_Identity=25.7352941176471, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI2367136, Length=248, Percent_Identity=25.8064516129032, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786713, Length=261, Percent_Identity=25.6704980842912, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1788296, Length=215, Percent_Identity=23.2558139534884, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788748, Length=298, Percent_Identity=21.8120805369128, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788297, Length=240, Percent_Identity=22.0833333333333, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34002; Mature: 34002

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLDPQSLRLFISVLEEGTIAAASQREHIAAAAVSRRLSELESLLGSQLLIRSNKGIEPT
CCCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC
EAGTALMYMARGVLNDLSGIVSEMREYSHGKRGSVRLLANISAITQFLPALLKSFMEKHP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCC
NIRVTLEQMESLAITRSVAESRADIGLFTRMPHEASVEIHPFRTDELVVLLQADHPLADR
CEEEEHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEEECCCCCEEEEEECCCCCHHH
ASVCFDEVLDFDVVSLHGGTHLHYQMLQAANESGRTFSPRMEVSSYDALCLMVQTGMGIG
HHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCCCEECCCCCCCCHHHEEEEEECCCCEE
ILPKGSTSAYSMPEMKILRLDEPWAQRELSMCVRNVETLTPAARLLFDHLQREQSAEIPA
EECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
VNGTAATSS
CCCCCCCCC
>Mature Secondary Structure
MKLDPQSLRLFISVLEEGTIAAASQREHIAAAAVSRRLSELESLLGSQLLIRSNKGIEPT
CCCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC
EAGTALMYMARGVLNDLSGIVSEMREYSHGKRGSVRLLANISAITQFLPALLKSFMEKHP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCC
NIRVTLEQMESLAITRSVAESRADIGLFTRMPHEASVEIHPFRTDELVVLLQADHPLADR
CEEEEHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEEECCCCCEEEEEECCCCCHHH
ASVCFDEVLDFDVVSLHGGTHLHYQMLQAANESGRTFSPRMEVSSYDALCLMVQTGMGIG
HHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCCCEECCCCCCCCHHHEEEEEECCCCEE
ILPKGSTSAYSMPEMKILRLDEPWAQRELSMCVRNVETLTPAARLLFDHLQREQSAEIPA
EECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
VNGTAATSS
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]