| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
Click here to switch to the map view.
The map label for this gene is arnT [H]
Identifier: 187928832
GI number: 187928832
Start: 1844762
End: 1846369
Strand: Direct
Name: arnT [H]
Synonym: Rpic_1749
Alternate gene names: 187928832
Gene position: 1844762-1846369 (Clockwise)
Preceding gene: 187928828
Following gene: 187928833
Centisome position: 46.79
GC content: 60.01
Gene sequence:
>1608_bases ATGGCTTTGACCATCGCACTCACGGTGGTCCTCTGGATGTCCACGCTATCCGTGCGTCCCCTCTATGAACCCGACGAGGG TCGTTACGCCGAGGTTCCGCGCGAGATGTTCGTCTCCGGCGATTGGGTCACGCCGCGGTTGAACGGCATCAAGTTCTTCG ACAAGCCGCCCCTGCAGTATTGGGCGACCGCCAGCGCCTATACGCTCTTCGGGCCGTCCGAGTGGACAGCAAGGATCTGG AGTGCGCTTGTGGGACTGCTGGGCGCACTCGCCGCATGGTGGGCGGCGCGATCGCTCTATGACACGCGCATAGGCCTCGC CTCAGCGCTGGTGCTCATCGGCGCTCCCCTCTGGATTCTCGGCTCGAATCTGACAACAACAGACATTGGTGTCGGCGCAC TGCTCGGCAGTGCCGCTCTCGTTTTCGCCGTGGCCTACCAGAATCGGGAACCTCGCTTATACCCCCTGATCTGGTTGTTG GTCGGTCTGGCATTTCTTGCCAAAGGCCTGATTGCCCTGGTACTGCCAGGAATCACGCTGCTGCTATACGGGGCGGTCAC TCGACAATTTTCCGCATTTTTTAGCGCGAGATTCTGGCGCTGGAGCCTGCTTGCGGTGGCCATCACCATGCCTTGGTTTG TCGTGGTGTCCCAGCGCAACCCCGAATTTCTGAATTACTTCTTCATCCACGAACACTTCGCGAGATTCTCGTCCTCGGTT CACGAGCGGGACAAGCCATTCTGGTTCTTCCTGGCCGTTGGTGCGGCAGGCGTCCTGCCGTTCATGGGCTTGATTCCCCG TGCTATCGCACTCCGCTCTCGCAGCGCACAGGCAACGCCTGGCTTCGACGCACGACTGTTTCTGTCGCTGTGGGTAGTCG TTGTCATTGCCTTCTTTTCGATTTCGCGCTCGAAGCTGCCGCTCTATATCCTGCCCGCCTTACCACCGGTGGCCGTCTTG CTCGCGTACAGATCCATGACTGCAGCCCGCCCCACACTGGCGGCAAGCTTTCTTGCCATGCCTGTGCTCGGCGTTGCCAT CGCCGTGCTGCTATGGCATCCGACAATGTCGAATGCGGTACTGAAGCTCAATATCAGCAATCCGGCCTCATTGCATACCT GGGGCGCCATCACGATGGGCATTCTGGTCATCGGTGGCTTCCTGGCCTTTGGGATCGCCCTGCGCGGCCACAGGCTCTGC GCGGTTGCCGTCGCTTCGCTGGCGACGCTGGCCAGCCTTCAGGCTGGCTTGATGGCGTCTCGGGCGTTTGGGTCCCTCTC CATCAAACCACTTGGCTTGGAAGCCAAGGCGGCGTCCCGCGACAACACACAACTGTTCAACGTGGGCCAGATTGACCGAG GTCTGGCGTTTTACGCCGAACGAGAACCGATCATTGTCGGGGCCAGATCCGAGCTGGATCTCGGCTTCTCGGTCGAGCCC GACAAGTGGATTGCTAATGAAGAAGCTTTTGCGCAGCGATGGCTGACCCCTGGTCACAAGCTCGCGGTCATGCGGCACGA GACGTTTCATCGACTGAGACCGCTGCTCGGCGGCAACACAACTGTGATCGGACGACATGGCGTCAACGTTCTGGTGCAAA AACCATGA
Upstream 100 bases:
>100_bases CCGGCATCTATGTCGTTGCGCCCTGAGAGCATTTGACCAAGCGCGGTAGCAGTGGCCACCGCACACCTGGACGGGCAGTC TCTTGAAGCGACAGATTTTC
Downstream 100 bases:
>100_bases ACATCCCATCACGATTTGTACGGTTTCTGGGCGCGGGGGCGACGGCAACCGCTACACACTACGCAACACTGATCACGCTG GTCGGTTTCGGGGTTGCAGC
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase [H]
Number of amino acids: Translated: 535; Mature: 534
Protein sequence:
>535_residues MALTIALTVVLWMSTLSVRPLYEPDEGRYAEVPREMFVSGDWVTPRLNGIKFFDKPPLQYWATASAYTLFGPSEWTARIW SALVGLLGALAAWWAARSLYDTRIGLASALVLIGAPLWILGSNLTTTDIGVGALLGSAALVFAVAYQNREPRLYPLIWLL VGLAFLAKGLIALVLPGITLLLYGAVTRQFSAFFSARFWRWSLLAVAITMPWFVVVSQRNPEFLNYFFIHEHFARFSSSV HERDKPFWFFLAVGAAGVLPFMGLIPRAIALRSRSAQATPGFDARLFLSLWVVVVIAFFSISRSKLPLYILPALPPVAVL LAYRSMTAARPTLAASFLAMPVLGVAIAVLLWHPTMSNAVLKLNISNPASLHTWGAITMGILVIGGFLAFGIALRGHRLC AVAVASLATLASLQAGLMASRAFGSLSIKPLGLEAKAASRDNTQLFNVGQIDRGLAFYAEREPIIVGARSELDLGFSVEP DKWIANEEAFAQRWLTPGHKLAVMRHETFHRLRPLLGGNTTVIGRHGVNVLVQKP
Sequences:
>Translated_535_residues MALTIALTVVLWMSTLSVRPLYEPDEGRYAEVPREMFVSGDWVTPRLNGIKFFDKPPLQYWATASAYTLFGPSEWTARIW SALVGLLGALAAWWAARSLYDTRIGLASALVLIGAPLWILGSNLTTTDIGVGALLGSAALVFAVAYQNREPRLYPLIWLL VGLAFLAKGLIALVLPGITLLLYGAVTRQFSAFFSARFWRWSLLAVAITMPWFVVVSQRNPEFLNYFFIHEHFARFSSSV HERDKPFWFFLAVGAAGVLPFMGLIPRAIALRSRSAQATPGFDARLFLSLWVVVVIAFFSISRSKLPLYILPALPPVAVL LAYRSMTAARPTLAASFLAMPVLGVAIAVLLWHPTMSNAVLKLNISNPASLHTWGAITMGILVIGGFLAFGIALRGHRLC AVAVASLATLASLQAGLMASRAFGSLSIKPLGLEAKAASRDNTQLFNVGQIDRGLAFYAEREPIIVGARSELDLGFSVEP DKWIANEEAFAQRWLTPGHKLAVMRHETFHRLRPLLGGNTTVIGRHGVNVLVQKP >Mature_534_residues ALTIALTVVLWMSTLSVRPLYEPDEGRYAEVPREMFVSGDWVTPRLNGIKFFDKPPLQYWATASAYTLFGPSEWTARIWS ALVGLLGALAAWWAARSLYDTRIGLASALVLIGAPLWILGSNLTTTDIGVGALLGSAALVFAVAYQNREPRLYPLIWLLV GLAFLAKGLIALVLPGITLLLYGAVTRQFSAFFSARFWRWSLLAVAITMPWFVVVSQRNPEFLNYFFIHEHFARFSSSVH ERDKPFWFFLAVGAAGVLPFMGLIPRAIALRSRSAQATPGFDARLFLSLWVVVVIAFFSISRSKLPLYILPALPPVAVLL AYRSMTAARPTLAASFLAMPVLGVAIAVLLWHPTMSNAVLKLNISNPASLHTWGAITMGILVIGGFLAFGIALRGHRLCA VAVASLATLASLQAGLMASRAFGSLSIKPLGLEAKAASRDNTQLFNVGQIDRGLAFYAEREPIIVGARSELDLGFSVEPD KWIANEEAFAQRWLTPGHKLAVMRHETFHRLRPLLGGNTTVIGRHGVNVLVQKP
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
Organism=Escherichia coli, GI1788591, Length=322, Percent_Identity=30.7453416149068, Blast_Score=156, Evalue=3e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 58551; Mature: 58419
Theoretical pI: Translated: 10.70; Mature: 10.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALTIALTVVLWMSTLSVRPLYEPDEGRYAEVPREMFVSGDWVTPRLNGIKFFDKPPLQY CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHCCCCCCCCCCCCEEECCCCCHHH WATASAYTLFGPSEWTARIWSALVGLLGALAAWWAARSLYDTRIGLASALVLIGAPLWIL EECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEE GSNLTTTDIGVGALLGSAALVFAVAYQNREPRLYPLIWLLVGLAFLAKGLIALVLPGITL CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLYGAVTRQFSAFFSARFWRWSLLAVAITMPWFVVVSQRNPEFLNYFFIHEHFARFSSSV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH HERDKPFWFFLAVGAAGVLPFMGLIPRAIALRSRSAQATPGFDARLFLSLWVVVVIAFFS HHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH ISRSKLPLYILPALPPVAVLLAYRSMTAARPTLAASFLAMPVLGVAIAVLLWHPTMSNAV CCCCCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE LKLNISNPASLHTWGAITMGILVIGGFLAFGIALRGHRLCAVAVASLATLASLQAGLMAS EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH RAFGSLSIKPLGLEAKAASRDNTQLFNVGQIDRGLAFYAEREPIIVGARSELDLGFSVEP HCCCCCEEEECCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCEEEECCCCCCCCCCCCC DKWIANEEAFAQRWLTPGHKLAVMRHETFHRLRPLLGGNTTVIGRHGVNVLVQKP CHHCCCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCEEEEEECCCEEEEECC >Mature Secondary Structure ALTIALTVVLWMSTLSVRPLYEPDEGRYAEVPREMFVSGDWVTPRLNGIKFFDKPPLQY CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHCCCCCCCCCCCCEEECCCCCHHH WATASAYTLFGPSEWTARIWSALVGLLGALAAWWAARSLYDTRIGLASALVLIGAPLWIL EECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEE GSNLTTTDIGVGALLGSAALVFAVAYQNREPRLYPLIWLLVGLAFLAKGLIALVLPGITL CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLYGAVTRQFSAFFSARFWRWSLLAVAITMPWFVVVSQRNPEFLNYFFIHEHFARFSSSV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH HERDKPFWFFLAVGAAGVLPFMGLIPRAIALRSRSAQATPGFDARLFLSLWVVVVIAFFS HHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH ISRSKLPLYILPALPPVAVLLAYRSMTAARPTLAASFLAMPVLGVAIAVLLWHPTMSNAV CCCCCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE LKLNISNPASLHTWGAITMGILVIGGFLAFGIALRGHRLCAVAVASLATLASLQAGLMAS EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH RAFGSLSIKPLGLEAKAASRDNTQLFNVGQIDRGLAFYAEREPIIVGARSELDLGFSVEP HCCCCCEEEECCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCEEEECCCCCCCCCCCCC DKWIANEEAFAQRWLTPGHKLAVMRHETFHRLRPLLGGNTTVIGRHGVNVLVQKP CHHCCCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCEEEEEECCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA