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The map label for this gene is xerD [H]

Identifier: 187928723

GI number: 187928723

Start: 1722537

End: 1723499

Strand: Reverse

Name: xerD [H]

Synonym: Rpic_1640

Alternate gene names: 187928723

Gene position: 1723499-1722537 (Counterclockwise)

Preceding gene: 187928724

Following gene: 187928715

Centisome position: 43.72

GC content: 65.11

Gene sequence:

>963_bases
ATGGCGGATATCGACAGGTATCTGCAGGCAGCGACCCGCGATCACACACGGCGCAGCTATCAGTCCGCCATCCGTCATTT
CGAGCAAGAGTGGGGTGGCTTCCTGCCGGCCAGCGCCGACAGCGTTGCACGCTATCTGGCTGAGCACGCACAGACGCTTT
CCATCAACACGCTGCGCCAACGGTTGGCTGCGATCGCGCAGTGGCACGTTTCGCAGGGCTTTCCCGACCCCACGCGAGCA
CCGCACGTCCGCAAGGTGCTCAAGGGCATCCAGGCACTGCACCCCGCGCAGGAGCGGCGCGCCAAGCCATTGCAGCTCGC
CCAGTTGGAGCAACTGGTTGCCTCGCTGGATGCGCAGATCGCGACCGCCTCGTCTGAGGGCAACGCCCATCAACTCCAGG
TGCATACCCGCAACAAGGCGCTGGTGCTGATCGGCTTCTGGCGGGGCTTCCGGTCGGACGAACTGAGTCGGCTGCAGATC
GAGCACATCACGGTGGAGCCCGGCCGGGGCATGACGATTTTCCTGCCGCGCACCAAGACGGACCGCAACCATGTCGGTAC
GACCCACAAGGCGCCCGCGTTGTCGCGCTTGTGCCCAGTCGCCGCCTACGAGGCCTGGTTGGCGGCGTCCGGCCTGACCG
AGGGCCCCGCGTTCCGCAGGATTGACCGCTGGAGCCGAATCGCAGCCGATGGACTGCAGGCCAGCAGCATCGTGCCTTTG
TTGCGCGCGCTGCTCCATCGCGCAGGACTGCCGCAATCGGACCGCTACAGCAGCCACTCACTACGACGGGGCTTTGCAAC
CTGGGCGAACTCGAACCAGTGGGATCTCAAGATGCTGATGGAATACGTCGGCTGGAAGGACGTACGCTCGGCCATGCGCT
ATATCGACGCGGCCGACCCATTTGCCCAGCATCGGATCGAAACAGCGCTGTCGGTCGCACCCCGGCCGGGCATTGCAGTC
TGA

Upstream 100 bases:

>100_bases
GGTGGCGATCTTGCTGATCATTGTGCTCAGCTTCGCGTATAACCTCCGATCGCAGAAGGCATCGAGCAAAGCGTAGTCGC
TACCTTGATTTGAGAGTTCA

Downstream 100 bases:

>100_bases
CAGGTCCGGTCTGGCGGACCTCTGCCATTGCTTTGACGCAGTAACCTTGCATGAACCTCTAATAAACGCGATTGCGGCCG
ACCCGTGCCAAGCAGGACTT

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MADIDRYLQAATRDHTRRSYQSAIRHFEQEWGGFLPASADSVARYLAEHAQTLSINTLRQRLAAIAQWHVSQGFPDPTRA
PHVRKVLKGIQALHPAQERRAKPLQLAQLEQLVASLDAQIATASSEGNAHQLQVHTRNKALVLIGFWRGFRSDELSRLQI
EHITVEPGRGMTIFLPRTKTDRNHVGTTHKAPALSRLCPVAAYEAWLAASGLTEGPAFRRIDRWSRIAADGLQASSIVPL
LRALLHRAGLPQSDRYSSHSLRRGFATWANSNQWDLKMLMEYVGWKDVRSAMRYIDAADPFAQHRIETALSVAPRPGIAV

Sequences:

>Translated_320_residues
MADIDRYLQAATRDHTRRSYQSAIRHFEQEWGGFLPASADSVARYLAEHAQTLSINTLRQRLAAIAQWHVSQGFPDPTRA
PHVRKVLKGIQALHPAQERRAKPLQLAQLEQLVASLDAQIATASSEGNAHQLQVHTRNKALVLIGFWRGFRSDELSRLQI
EHITVEPGRGMTIFLPRTKTDRNHVGTTHKAPALSRLCPVAAYEAWLAASGLTEGPAFRRIDRWSRIAADGLQASSIVPL
LRALLHRAGLPQSDRYSSHSLRRGFATWANSNQWDLKMLMEYVGWKDVRSAMRYIDAADPFAQHRIETALSVAPRPGIAV
>Mature_319_residues
ADIDRYLQAATRDHTRRSYQSAIRHFEQEWGGFLPASADSVARYLAEHAQTLSINTLRQRLAAIAQWHVSQGFPDPTRAP
HVRKVLKGIQALHPAQERRAKPLQLAQLEQLVASLDAQIATASSEGNAHQLQVHTRNKALVLIGFWRGFRSDELSRLQIE
HITVEPGRGMTIFLPRTKTDRNHVGTTHKAPALSRLCPVAAYEAWLAASGLTEGPAFRRIDRWSRIAADGLQASSIVPLL
RALLHRAGLPQSDRYSSHSLRRGFATWANSNQWDLKMLMEYVGWKDVRSAMRYIDAADPFAQHRIETALSVAPRPGIAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35860; Mature: 35729

Theoretical pI: Translated: 10.86; Mature: 10.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADIDRYLQAATRDHTRRSYQSAIRHFEQEWGGFLPASADSVARYLAEHAQTLSINTLRQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RLAAIAQWHVSQGFPDPTRAPHVRKVLKGIQALHPAQERRAKPLQLAQLEQLVASLDAQI
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHH
ATASSEGNAHQLQVHTRNKALVLIGFWRGFRSDELSRLQIEHITVEPGRGMTIFLPRTKT
EECCCCCCCEEEEEEECCCEEEEEEECCCCCCCCHHHEEEEEEEECCCCCEEEEECCCCC
DRNHVGTTHKAPALSRLCPVAAYEAWLAASGLTEGPAFRRIDRWSRIAADGLQASSIVPL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
LRALLHRAGLPQSDRYSSHSLRRGFATWANSNQWDLKMLMEYVGWKDVRSAMRYIDAADP
HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHCCCH
FAQHRIETALSVAPRPGIAV
HHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
ADIDRYLQAATRDHTRRSYQSAIRHFEQEWGGFLPASADSVARYLAEHAQTLSINTLRQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RLAAIAQWHVSQGFPDPTRAPHVRKVLKGIQALHPAQERRAKPLQLAQLEQLVASLDAQI
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHH
ATASSEGNAHQLQVHTRNKALVLIGFWRGFRSDELSRLQIEHITVEPGRGMTIFLPRTKT
EECCCCCCCEEEEEEECCCEEEEEEECCCCCCCCHHHEEEEEEEECCCCCEEEEECCCCC
DRNHVGTTHKAPALSRLCPVAAYEAWLAASGLTEGPAFRRIDRWSRIAADGLQASSIVPL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
LRALLHRAGLPQSDRYSSHSLRRGFATWANSNQWDLKMLMEYVGWKDVRSAMRYIDAADP
HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHCCCH
FAQHRIETALSVAPRPGIAV
HHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]