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The map label for this gene is 187928673

Identifier: 187928673

GI number: 187928673

Start: 1680183

End: 1681613

Strand: Reverse

Name: 187928673

Synonym: Rpic_1590

Alternate gene names: NA

Gene position: 1681613-1680183 (Counterclockwise)

Preceding gene: 187928675

Following gene: 187928672

Centisome position: 42.65

GC content: 62.4

Gene sequence:

>1431_bases
ATGTTGTTTCTTTCGATGCTGCAATACGCTTGGGTCGCAGTACGTCCGCTGGTTCTGGCACGCGCCGCAGCGCTTGGCCG
TCCAGCGTTGTTGGCTGTGATCACGCTGCTGTCGGTTTGTGCGCAGGCTGCCCGCGCGGAAGAGGCCCCGGTTGCCGATG
CACCGCTGATCGCCAGTGGTGAATTGGGCGATCGCTTTGGATTCCATGGCCAATCGACGTGGGTCTGGCAAGCCAAGCCG
GCATTCAACGCGCCGTACAGCGGCGACAACAGCCTGACACCGGGCCGCGCCACCAGCTATTCCTTCAGCACCACGCTGGA
TTTGGGCATGCGGCTGTGGAAGGGCGGGGAGTTCCACTTCAACCCGGAAGTGGTGATGGGCAAGGCTTTCTCCGATCTGC
ATGGTTTGGGCGGCCCAACCAACGGGGAGTTGGCCAAGGTCACTGGCACCGACCCGACGCTGTATCGCGCCCGTGTTTTC
ATGCGTCAGACCTGGGGACTGGGCGGCGATACGGAAAAGGTCGACGCCGACTTCAACCAGTTCGCCGATGTGGTCGACAA
GCGCCGCGTGGTACTGACCGTGGGCAACCTGCCAGTGCTCGATGTGTTCGATGCCGTGGAACATGCGCATGACCCGCGCA
CACAGTTTCTGAACTGGTCATTCATGACGCATCCATCTTTCGACTATCCCGCCGATGCGCGCGGCTACAGCTGGGGCGTG
GCGCTGGAATATATCGACAGCGAACTCGGCTGGGCTGTCCGCGCAGGCCGTTTCCTGCAACCGGTGGAGTCCAATGGTTT
GCCGCTCGACACGCGCTTTCTCAAGCACTATGGCGACATGCTCGAGCTGGAAAAGAGCTACACGCTGTTCGGCCAGGAGG
GCAAGGTGCGCCTGCTGGGTTGGCGCAACTTAGCGCGCATGGGCCGCTTTGATGATGCGATTGCGCTCGGGCAGGCCACC
GGTGCCGCGCCAGACCTGAGCCAGGTGCGGCGCGAGCACGCCAAGGTGGGCGTGGGCCTGTCGTTCGAGCAGAAAGTGGG
CGAAAACCTGGGCCTGTTCACCCGCCTGAACTGGTCGGATGACAAGACTGAGACCTATGCTTTTACCGAGGCGGGCCGCA
ACGTGTCGTTCGGCGGTCTGCTCAAGGGCACGTCCTGGCGGCGGCCGAATGATGTGCTGGGAGCGGCCTTTTCGCTCAAC
ATGCTGGGCCCGGATCATCGTGCCTATCTGGCGGCGGGCGGCAGCGGCGCCTTCCTGGGTGACGGCGCGCTGAACTATGG
CCACGAGCGCATACTCGAAGTGTTCTACAGCTTTCAACCGGTCAAGGGCATCACGCTCAGCCCCGATTTTCAGTTGATCC
AGAACCCCGGTTACAACCGGGACCGCGGGCCTGCCAAGTTCTTTGGCATTCGTGCCCACGCGGAGTTCTAA

Upstream 100 bases:

>100_bases
CGGCCATGTGGCTGCGTGCGCGCTTGCGTGCGTGGTTTCCTGGGAGGGCCGTGGTCGGCTCGTGCCTACGTTCGTCATAG
AAGCGAACGGGGGAGGTCTC

Downstream 100 bases:

>100_bases
CGCCTACGGAGGACCCATATGGACAGTCCGAGTCGACCTTATCCGACATCCACATCTGTTTCCCACTAGGCGAGTCTGCC
GCACGGTTTTCCCTGCTGTT

Product: Carbohydrate-selective porin OprB

Products: NA

Alternate protein names: OmpA-Like Transmembrane Domain-Containing Protein; Carbohydrate-Selective Porin Oprb; OmpA-Like Transmembrane Domain Protein; OmpA Domain-Containing Protein; Outer Membrane Protein A-Like; Carbohydrate-Selective Porin

Number of amino acids: Translated: 476; Mature: 476

Protein sequence:

>476_residues
MLFLSMLQYAWVAVRPLVLARAAALGRPALLAVITLLSVCAQAARAEEAPVADAPLIASGELGDRFGFHGQSTWVWQAKP
AFNAPYSGDNSLTPGRATSYSFSTTLDLGMRLWKGGEFHFNPEVVMGKAFSDLHGLGGPTNGELAKVTGTDPTLYRARVF
MRQTWGLGGDTEKVDADFNQFADVVDKRRVVLTVGNLPVLDVFDAVEHAHDPRTQFLNWSFMTHPSFDYPADARGYSWGV
ALEYIDSELGWAVRAGRFLQPVESNGLPLDTRFLKHYGDMLELEKSYTLFGQEGKVRLLGWRNLARMGRFDDAIALGQAT
GAAPDLSQVRREHAKVGVGLSFEQKVGENLGLFTRLNWSDDKTETYAFTEAGRNVSFGGLLKGTSWRRPNDVLGAAFSLN
MLGPDHRAYLAAGGSGAFLGDGALNYGHERILEVFYSFQPVKGITLSPDFQLIQNPGYNRDRGPAKFFGIRAHAEF

Sequences:

>Translated_476_residues
MLFLSMLQYAWVAVRPLVLARAAALGRPALLAVITLLSVCAQAARAEEAPVADAPLIASGELGDRFGFHGQSTWVWQAKP
AFNAPYSGDNSLTPGRATSYSFSTTLDLGMRLWKGGEFHFNPEVVMGKAFSDLHGLGGPTNGELAKVTGTDPTLYRARVF
MRQTWGLGGDTEKVDADFNQFADVVDKRRVVLTVGNLPVLDVFDAVEHAHDPRTQFLNWSFMTHPSFDYPADARGYSWGV
ALEYIDSELGWAVRAGRFLQPVESNGLPLDTRFLKHYGDMLELEKSYTLFGQEGKVRLLGWRNLARMGRFDDAIALGQAT
GAAPDLSQVRREHAKVGVGLSFEQKVGENLGLFTRLNWSDDKTETYAFTEAGRNVSFGGLLKGTSWRRPNDVLGAAFSLN
MLGPDHRAYLAAGGSGAFLGDGALNYGHERILEVFYSFQPVKGITLSPDFQLIQNPGYNRDRGPAKFFGIRAHAEF
>Mature_476_residues
MLFLSMLQYAWVAVRPLVLARAAALGRPALLAVITLLSVCAQAARAEEAPVADAPLIASGELGDRFGFHGQSTWVWQAKP
AFNAPYSGDNSLTPGRATSYSFSTTLDLGMRLWKGGEFHFNPEVVMGKAFSDLHGLGGPTNGELAKVTGTDPTLYRARVF
MRQTWGLGGDTEKVDADFNQFADVVDKRRVVLTVGNLPVLDVFDAVEHAHDPRTQFLNWSFMTHPSFDYPADARGYSWGV
ALEYIDSELGWAVRAGRFLQPVESNGLPLDTRFLKHYGDMLELEKSYTLFGQEGKVRLLGWRNLARMGRFDDAIALGQAT
GAAPDLSQVRREHAKVGVGLSFEQKVGENLGLFTRLNWSDDKTETYAFTEAGRNVSFGGLLKGTSWRRPNDVLGAAFSLN
MLGPDHRAYLAAGGSGAFLGDGALNYGHERILEVFYSFQPVKGITLSPDFQLIQNPGYNRDRGPAKFFGIRAHAEF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52284; Mature: 52284

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFLSMLQYAWVAVRPLVLARAAALGRPALLAVITLLSVCAQAARAEEAPVADAPLIASG
CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC
ELGDRFGFHGQSTWVWQAKPAFNAPYSGDNSLTPGRATSYSFSTTLDLGMRLWKGGEFHF
CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCEEE
NPEVVMGKAFSDLHGLGGPTNGELAKVTGTDPTLYRARVFMRQTWGLGGDTEKVDADFNQ
CCCEEECCHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH
FADVVDKRRVVLTVGNLPVLDVFDAVEHAHDPRTQFLNWSFMTHPSFDYPADARGYSWGV
HHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCHHHEEEEEEEECCCCCCCCCCCCCCCCE
ALEYIDSELGWAVRAGRFLQPVESNGLPLDTRFLKHYGDMLELEKSYTLFGQEGKVRLLG
EHEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEEE
WRNLARMGRFDDAIALGQATGAAPDLSQVRREHAKVGVGLSFEQKVGENLGLFTRLNWSD
CHHHHHHCCCCCHHEECCCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEECCCC
DKTETYAFTEAGRNVSFGGLLKGTSWRRPNDVLGAAFSLNMLGPDHRAYLAAGGSGAFLG
CCCCEEEEECCCCCCCCCCEECCCCCCCCHHHHCEEEEEECCCCCCCEEEEECCCCCEEC
DGALNYGHERILEVFYSFQPVKGITLSPDFQLIQNPGYNRDRGPAKFFGIRAHAEF
CCCHHHHHHHHHHHHHHCCCCCCCEECCCHHEECCCCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MLFLSMLQYAWVAVRPLVLARAAALGRPALLAVITLLSVCAQAARAEEAPVADAPLIASG
CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECC
ELGDRFGFHGQSTWVWQAKPAFNAPYSGDNSLTPGRATSYSFSTTLDLGMRLWKGGEFHF
CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCEEE
NPEVVMGKAFSDLHGLGGPTNGELAKVTGTDPTLYRARVFMRQTWGLGGDTEKVDADFNQ
CCCEEECCHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH
FADVVDKRRVVLTVGNLPVLDVFDAVEHAHDPRTQFLNWSFMTHPSFDYPADARGYSWGV
HHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCHHHEEEEEEEECCCCCCCCCCCCCCCCE
ALEYIDSELGWAVRAGRFLQPVESNGLPLDTRFLKHYGDMLELEKSYTLFGQEGKVRLLG
EHEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEEE
WRNLARMGRFDDAIALGQATGAAPDLSQVRREHAKVGVGLSFEQKVGENLGLFTRLNWSD
CHHHHHHCCCCCHHEECCCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEECCCC
DKTETYAFTEAGRNVSFGGLLKGTSWRRPNDVLGAAFSLNMLGPDHRAYLAAGGSGAFLG
CCCCEEEEECCCCCCCCCCEECCCCCCCCHHHHCEEEEEECCCCCCCEEEEECCCCCEEC
DGALNYGHERILEVFYSFQPVKGITLSPDFQLIQNPGYNRDRGPAKFFGIRAHAEF
CCCHHHHHHHHHHHHHHCCCCCCCEECCCHHEECCCCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA