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The map label for this gene is 187928653

Identifier: 187928653

GI number: 187928653

Start: 1658054

End: 1659514

Strand: Reverse

Name: 187928653

Synonym: Rpic_1569

Alternate gene names: NA

Gene position: 1659514-1658054 (Counterclockwise)

Preceding gene: 187928654

Following gene: 187928652

Centisome position: 42.09

GC content: 61.33

Gene sequence:

>1461_bases
ATGCAGCCTACCGAAGAGCAAACCGCTGTCGTTGATGCGTCCTTGGATGGCGAACCGTTGAAGGTTGACGCTCGTGCGGG
CGCCGGCAAGACCTCCACCCTAGGCCTCGTCTCGACCGCCAAAGGGCGGGCTCGTGGTGTCTATTTGGCCTTCAATCGCC
TCATTGCGGAGGAGGCCAAGCGCAAGTTCCCTTTGTCCGTGCGGTGCGGAACGGTCAACTCCCAGGCATACAGATCCGTA
TCGGCCGACATCACCCGGAAGCTCCGTAATCCGTTGGAGCCCAACTACCTCCTCGCAGAGCGATTCGGCCTACAGCCTAT
CAAGGTCCCGACAACGATCGGGAAGAACCTTGAACTGACCTCCGCCAAGCTTGGCCGGATGGTGCGAGACGGCTTGGCCA
GGTTCTGTGGCTCTGCCAAGCCGACGCCGCTCGATTGGCACATCCCGGTCGATCCGCTGATCACCGAGCAAGCGGCTGAA
GCGCTACGCCATGCGCTGCTGCCTTCGGTCGTCAAGCTCTGGGAGGAATCACAAAACCCCCAATCCCCGGGCGCTATCTC
CCACGACGTGTACGTCAAGCTGTGGCAGTTGAGCCGGCCGACCATCCCTGCCGACTACATCCTATTCGATGAGTCGCAAG
ACGCAAACGGCCTGATGCTTTCGGTGCTTCGACGCCAATCGGCCCAGGTGATCTATGTCGGCGACCCGTACCAACAGATC
TACGAGTGGCGCGGTGCCGTCAACGCGATGGACCACATCAAGGCGCAGAAGCGTGCGCTGACGCTGTCCTTCCGCTTTGG
CGAGCCGATCGCTGCGCTGGCGACCCGCATCCTGCGCACGATGGACGAGGAAGTGCCCGTCAGGGGCCAGGCCAGCATTG
CATCGCGTATCCACAAGGACATCTCGCCGAGCGAGCTGAAGGTCAACGCCGTGCTTTGCCGCAAGAATGCAACGGTGCTG
TCCTATGTCGCCGATGGTCTCCAACGCGGCGAAAAGGTCGCGATCCGCGCCAATATCCGCGACATCATGGCCTTCCTGGA
CGGCGCCGAACGGCTGATGTGCGGCCAGCGGACCGACTATCCGACCGCGCTATCCCTGTTCGCCAACTGGTCGGAGGTGC
AGGACTACGCCGACTCGTTTGCCGGGCGAGACCTGAAGCCGTTCGTCAAGCTGATCGACGATGAAGGCATCCCCTACGTC
CGCCAGCTGCTTAGCACTGTCAGCCCAGAGTCCGAAGCCGATTACGTGGTCTCGACCATCCATCAGGTCAAGGGCCTTGA
GTACGACTCGGTCCGCATTGCCGGCGACTTCAGGTTCAAGACGGACGACGACGGCAAGTACACGATGGACACGGAAGAGA
AGCGCCTCCTCTATGTCGCACTCACGCGCGCCAAGCGCAACCTGGACATCACTGCCATCCAAGTTGACATGCACAGAATG
TTCCGGGATGCCGGGGTGTAA

Upstream 100 bases:

>100_bases
CAGCAAACCGGCGAGGGCGAGCGCCGCCGTGCGGCGATCCGGGAGAGGGATGCGGCGTTTCGCGCGTCTCTCGTTGACAC
ACAACTGACCCTCGCCTGAC

Downstream 100 bases:

>100_bases
AGGGGCACACCATGATCAAGATCCGGATCGGCCCGTCCGACTTCGACCTTGCTGAGGTGCTGGAGAACCCGGGCCGCTAC
ACAACCCAGCTCGAGCGCGC

Product: putative DNA helicase

Products: NA

Alternate protein names: Superfamily I DNA/RNA Helicase-Like Protein; Helicase; Superfamily I DNA/RNA Helicase; Superfamily I DNA And RNA Helicase; Helicase Superfamily Protein I; UvrD/REP Helicase; F-Box Only Protein; I DNA And RNA Helicase Protein; UvrD/Rep Family Helicase; I DNA And RNA Helicase; I DNA/RNA Helicase; Helicase Superfamily I

Number of amino acids: Translated: 486; Mature: 486

Protein sequence:

>486_residues
MQPTEEQTAVVDASLDGEPLKVDARAGAGKTSTLGLVSTAKGRARGVYLAFNRLIAEEAKRKFPLSVRCGTVNSQAYRSV
SADITRKLRNPLEPNYLLAERFGLQPIKVPTTIGKNLELTSAKLGRMVRDGLARFCGSAKPTPLDWHIPVDPLITEQAAE
ALRHALLPSVVKLWEESQNPQSPGAISHDVYVKLWQLSRPTIPADYILFDESQDANGLMLSVLRRQSAQVIYVGDPYQQI
YEWRGAVNAMDHIKAQKRALTLSFRFGEPIAALATRILRTMDEEVPVRGQASIASRIHKDISPSELKVNAVLCRKNATVL
SYVADGLQRGEKVAIRANIRDIMAFLDGAERLMCGQRTDYPTALSLFANWSEVQDYADSFAGRDLKPFVKLIDDEGIPYV
RQLLSTVSPESEADYVVSTIHQVKGLEYDSVRIAGDFRFKTDDDGKYTMDTEEKRLLYVALTRAKRNLDITAIQVDMHRM
FRDAGV

Sequences:

>Translated_486_residues
MQPTEEQTAVVDASLDGEPLKVDARAGAGKTSTLGLVSTAKGRARGVYLAFNRLIAEEAKRKFPLSVRCGTVNSQAYRSV
SADITRKLRNPLEPNYLLAERFGLQPIKVPTTIGKNLELTSAKLGRMVRDGLARFCGSAKPTPLDWHIPVDPLITEQAAE
ALRHALLPSVVKLWEESQNPQSPGAISHDVYVKLWQLSRPTIPADYILFDESQDANGLMLSVLRRQSAQVIYVGDPYQQI
YEWRGAVNAMDHIKAQKRALTLSFRFGEPIAALATRILRTMDEEVPVRGQASIASRIHKDISPSELKVNAVLCRKNATVL
SYVADGLQRGEKVAIRANIRDIMAFLDGAERLMCGQRTDYPTALSLFANWSEVQDYADSFAGRDLKPFVKLIDDEGIPYV
RQLLSTVSPESEADYVVSTIHQVKGLEYDSVRIAGDFRFKTDDDGKYTMDTEEKRLLYVALTRAKRNLDITAIQVDMHRM
FRDAGV
>Mature_486_residues
MQPTEEQTAVVDASLDGEPLKVDARAGAGKTSTLGLVSTAKGRARGVYLAFNRLIAEEAKRKFPLSVRCGTVNSQAYRSV
SADITRKLRNPLEPNYLLAERFGLQPIKVPTTIGKNLELTSAKLGRMVRDGLARFCGSAKPTPLDWHIPVDPLITEQAAE
ALRHALLPSVVKLWEESQNPQSPGAISHDVYVKLWQLSRPTIPADYILFDESQDANGLMLSVLRRQSAQVIYVGDPYQQI
YEWRGAVNAMDHIKAQKRALTLSFRFGEPIAALATRILRTMDEEVPVRGQASIASRIHKDISPSELKVNAVLCRKNATVL
SYVADGLQRGEKVAIRANIRDIMAFLDGAERLMCGQRTDYPTALSLFANWSEVQDYADSFAGRDLKPFVKLIDDEGIPYV
RQLLSTVSPESEADYVVSTIHQVKGLEYDSVRIAGDFRFKTDDDGKYTMDTEEKRLLYVALTRAKRNLDITAIQVDMHRM
FRDAGV

Specific function: Unknown

COG id: COG0210

COG function: function code L; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI30795117, Length=525, Percent_Identity=29.5238095238095, Blast_Score=155, Evalue=1e-37,
Organism=Homo sapiens, GI30795119, Length=525, Percent_Identity=29.5238095238095, Blast_Score=155, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54140; Mature: 54140

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPTEEQTAVVDASLDGEPLKVDARAGAGKTSTLGLVSTAKGRARGVYLAFNRLIAEEAK
CCCCCCCCEEEEECCCCCCEEEECCCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHHHH
RKFPLSVRCGTVNSQAYRSVSADITRKLRNPLEPNYLLAERFGLQPIKVPTTIGKNLELT
HCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHCCCCEECCHHCCCCCEEH
SAKLGRMVRDGLARFCGSAKPTPLDWHIPVDPLITEQAAEALRHALLPSVVKLWEESQNP
HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QSPGAISHDVYVKLWQLSRPTIPADYILFDESQDANGLMLSVLRRQSAQVIYVGDPYQQI
CCCCCCCHHHEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCHHHHH
YEWRGAVNAMDHIKAQKRALTLSFRFGEPIAALATRILRTMDEEVPVRGQASIASRIHKD
HHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
ISPSELKVNAVLCRKNATVLSYVADGLQRGEKVAIRANIRDIMAFLDGAERLMCGQRTDY
CCCCCEEEEEEEEECCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCC
PTALSLFANWSEVQDYADSFAGRDLKPFVKLIDDEGIPYVRQLLSTVSPESEADYVVSTI
CHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHH
HQVKGLEYDSVRIAGDFRFKTDDDGKYTMDTEEKRLLYVALTRAKRNLDITAIQVDMHRM
HHHHCCCCCCEEEEEEEEEECCCCCCEEECCCCCEEEEEEEEHHCCCCCEEEEEHHHHHH
FRDAGV
HHHCCC
>Mature Secondary Structure
MQPTEEQTAVVDASLDGEPLKVDARAGAGKTSTLGLVSTAKGRARGVYLAFNRLIAEEAK
CCCCCCCCEEEEECCCCCCEEEECCCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHHHH
RKFPLSVRCGTVNSQAYRSVSADITRKLRNPLEPNYLLAERFGLQPIKVPTTIGKNLELT
HCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHCCCCEECCHHCCCCCEEH
SAKLGRMVRDGLARFCGSAKPTPLDWHIPVDPLITEQAAEALRHALLPSVVKLWEESQNP
HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QSPGAISHDVYVKLWQLSRPTIPADYILFDESQDANGLMLSVLRRQSAQVIYVGDPYQQI
CCCCCCCHHHEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCHHHHH
YEWRGAVNAMDHIKAQKRALTLSFRFGEPIAALATRILRTMDEEVPVRGQASIASRIHKD
HHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
ISPSELKVNAVLCRKNATVLSYVADGLQRGEKVAIRANIRDIMAFLDGAERLMCGQRTDY
CCCCCEEEEEEEEECCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCC
PTALSLFANWSEVQDYADSFAGRDLKPFVKLIDDEGIPYVRQLLSTVSPESEADYVVSTI
CHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHH
HQVKGLEYDSVRIAGDFRFKTDDDGKYTMDTEEKRLLYVALTRAKRNLDITAIQVDMHRM
HHHHCCCCCCEEEEEEEEEECCCCCCEEECCCCCEEEEEEEEHHCCCCCEEEEEHHHHHH
FRDAGV
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA