Click here to switch to the map view.

The map label for this gene is 187928624

Identifier: 187928624

GI number: 187928624

Start: 1632361

End: 1633659

Strand: Direct

Name: 187928624

Synonym: Rpic_1540

Alternate gene names: NA

Gene position: 1632361-1633659 (Clockwise)

Preceding gene: 187928623

Following gene: 187928625

Centisome position: 41.4

GC content: 58.74

Gene sequence:

>1299_bases
ATGGATGCAATTCTCGGTTACATGATCGCCATCGCCCTGTCGTTGCTGAGCGTGGGGCAGTTCTACCAGTGGCAGGCGTC
GGGCATGACAAACGTGCAGACTGCGGCCGCGGCAAGCCAGCAGGTGATCTACAACAAGGCCGCGGCTCAGTACGTTCAAG
ACAACGGGACATCGATCGCGGCGATTGCAACGCCTACCGTGCCGGTGACCATCACCACCGCAATGCTGATCAGCAGCGGT
TACTTGCCGAACGGCTTTTCGACCACGAATGTTTTCGGACAGACATGGCAACTTCAGGTCCTGCAGCCCACCGCGGGGAC
GTTGCAGTCGGTCGTGCAATCGGTTGGCGGGAGGGCAATCGCGGACACTGTCCAGCTTGTTCAGATTGCCGCCCAAGCAG
GGGCGCAGGGCGGATTCGTCCCCTATGCCGGCCAGAATGGTGACGCAACCATGACCCCCGCAAATGCTTACGGCGCATAC
GGGGCATGGAAGCTTCCGTTGACCAATTTCACCAATCCAGGCAGCGGTCACCTGGTGTCACTGCTTGCGTTCACAGGCGT
GAGTGCGAACAACAGCTATCTGTACCGCGTTCAGGTTCCTGGCCATCCCGAGCTGAACAACATGCAGACCGACCTTGGTA
TGACCGATCAAGGGGGGGCGCTGCACAACATCAGTGGCGCACAGCAGATCAGCTCACAAAGCTTGCAGGCTCTTTCCGGT
GGTTCGCTTGCCGTGCCATCGATCACGACCGCAAACGGCAAAGTAGTCACTTGGGAGCAGGTGGGCGAGGGCGGTGTGCT
AGGCCTGAAAGGATCGAACGGTACATCGATCTACCTTGAGAGCTTGAATGGCACGTTCCGTATCGTCAACAACCCTTGGA
CACAGTCCATATTCTCGGTCGACCAGTCCGGCGATGTGGTCGCGGCGGGAACGCAGAGGCTGGGTAACGTTGCTTCGCCC
AACACGGCGTGTGCCCAAAACGGAACACAGGCAGGCAATGCTGATGGCTCTGGCCAGCAATTAGTTTGTCTGTACAACGT
GTGGAAACCAATTGGCGGGAGCTTGCAGCGCTTCGGGTATTACACCGCGCAACATGGTTCTGGAATTCCGAGGCCGACTT
GTCCGGCGGGCGGAACCCCGATGATCGTTGTGACCCCGGCGAACTTTGCGGTCGATCCGACGACGGTCGTCAACTATGGA
GCGTGGGGATCAGGCCCGTGGACTGTCTACATCATGGATGGATCAAATGCCGGCATCGGTGGCGCGACTGCCACTGTTGG
GACCTATTGCGGATACTAA

Upstream 100 bases:

>100_bases
GGTGAGTTTGGCGGGCGGAAACACCATGTCAGTACCCACGACCATCCCCGTTAGCTCACTCCTCAATTGGGTTCAGACGT
CTTCCTGAAGGCGACGCGCA

Downstream 100 bases:

>100_bases
TGGAGTCGTGAAATGAGGATGCTACTTAGGGTCTTGTCGGTGATTGTGCTTCTGGCGGGATCCAGACTTGCAATGGCGAA
CCCTGTGCTTTGTTCACCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MDAILGYMIAIALSLLSVGQFYQWQASGMTNVQTAAAASQQVIYNKAAAQYVQDNGTSIAAIATPTVPVTITTAMLISSG
YLPNGFSTTNVFGQTWQLQVLQPTAGTLQSVVQSVGGRAIADTVQLVQIAAQAGAQGGFVPYAGQNGDATMTPANAYGAY
GAWKLPLTNFTNPGSGHLVSLLAFTGVSANNSYLYRVQVPGHPELNNMQTDLGMTDQGGALHNISGAQQISSQSLQALSG
GSLAVPSITTANGKVVTWEQVGEGGVLGLKGSNGTSIYLESLNGTFRIVNNPWTQSIFSVDQSGDVVAAGTQRLGNVASP
NTACAQNGTQAGNADGSGQQLVCLYNVWKPIGGSLQRFGYYTAQHGSGIPRPTCPAGGTPMIVVTPANFAVDPTTVVNYG
AWGSGPWTVYIMDGSNAGIGGATATVGTYCGY

Sequences:

>Translated_432_residues
MDAILGYMIAIALSLLSVGQFYQWQASGMTNVQTAAAASQQVIYNKAAAQYVQDNGTSIAAIATPTVPVTITTAMLISSG
YLPNGFSTTNVFGQTWQLQVLQPTAGTLQSVVQSVGGRAIADTVQLVQIAAQAGAQGGFVPYAGQNGDATMTPANAYGAY
GAWKLPLTNFTNPGSGHLVSLLAFTGVSANNSYLYRVQVPGHPELNNMQTDLGMTDQGGALHNISGAQQISSQSLQALSG
GSLAVPSITTANGKVVTWEQVGEGGVLGLKGSNGTSIYLESLNGTFRIVNNPWTQSIFSVDQSGDVVAAGTQRLGNVASP
NTACAQNGTQAGNADGSGQQLVCLYNVWKPIGGSLQRFGYYTAQHGSGIPRPTCPAGGTPMIVVTPANFAVDPTTVVNYG
AWGSGPWTVYIMDGSNAGIGGATATVGTYCGY
>Mature_432_residues
MDAILGYMIAIALSLLSVGQFYQWQASGMTNVQTAAAASQQVIYNKAAAQYVQDNGTSIAAIATPTVPVTITTAMLISSG
YLPNGFSTTNVFGQTWQLQVLQPTAGTLQSVVQSVGGRAIADTVQLVQIAAQAGAQGGFVPYAGQNGDATMTPANAYGAY
GAWKLPLTNFTNPGSGHLVSLLAFTGVSANNSYLYRVQVPGHPELNNMQTDLGMTDQGGALHNISGAQQISSQSLQALSG
GSLAVPSITTANGKVVTWEQVGEGGVLGLKGSNGTSIYLESLNGTFRIVNNPWTQSIFSVDQSGDVVAAGTQRLGNVASP
NTACAQNGTQAGNADGSGQQLVCLYNVWKPIGGSLQRFGYYTAQHGSGIPRPTCPAGGTPMIVVTPANFAVDPTTVVNYG
AWGSGPWTVYIMDGSNAGIGGATATVGTYCGY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007001 [H]

Pfam domain/function: PF04917 Shufflon_N [H]

EC number: NA

Molecular weight: Translated: 44372; Mature: 44372

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAILGYMIAIALSLLSVGQFYQWQASGMTNVQTAAAASQQVIYNKAAAQYVQDNGTSIA
CCHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
AIATPTVPVTITTAMLISSGYLPNGFSTTNVFGQTWQLQVLQPTAGTLQSVVQSVGGRAI
EEECCCCCEEEHEEHHHHCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCHHH
ADTVQLVQIAAQAGAQGGFVPYAGQNGDATMTPANAYGAYGAWKLPLTNFTNPGSGHLVS
HHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCCCCCCEEECCCCCCCCCCCCHHEE
LLAFTGVSANNSYLYRVQVPGHPELNNMQTDLGMTDQGGALHNISGAQQISSQSLQALSG
EEHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHCC
GSLAVPSITTANGKVVTWEQVGEGGVLGLKGSNGTSIYLESLNGTFRIVNNPWTQSIFSV
CCEECCEEEECCCCEEEHHCCCCCCEEEEECCCCCEEEEEECCCEEEEECCCHHHHHHCC
DQSGDVVAAGTQRLGNVASPNTACAQNGTQAGNADGSGQQLVCLYNVWKPIGGSLQRFGY
CCCCCEEEECHHHCCCCCCCCCHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHEE
YTAQHGSGIPRPTCPAGGTPMIVVTPANFAVDPTTVVNYGAWGSGPWTVYIMDGSNAGIG
EEECCCCCCCCCCCCCCCCCEEEEECCCCEECCCCEEEECCCCCCCEEEEEECCCCCCCC
GATATVGTYCGY
CCHHHHHHCCCC
>Mature Secondary Structure
MDAILGYMIAIALSLLSVGQFYQWQASGMTNVQTAAAASQQVIYNKAAAQYVQDNGTSIA
CCHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
AIATPTVPVTITTAMLISSGYLPNGFSTTNVFGQTWQLQVLQPTAGTLQSVVQSVGGRAI
EEECCCCCEEEHEEHHHHCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCHHH
ADTVQLVQIAAQAGAQGGFVPYAGQNGDATMTPANAYGAYGAWKLPLTNFTNPGSGHLVS
HHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCCCCCCEEECCCCCCCCCCCCHHEE
LLAFTGVSANNSYLYRVQVPGHPELNNMQTDLGMTDQGGALHNISGAQQISSQSLQALSG
EEHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHCC
GSLAVPSITTANGKVVTWEQVGEGGVLGLKGSNGTSIYLESLNGTFRIVNNPWTQSIFSV
CCEECCEEEECCCCEEEHHCCCCCCEEEEECCCCCEEEEEECCCEEEEECCCHHHHHHCC
DQSGDVVAAGTQRLGNVASPNTACAQNGTQAGNADGSGQQLVCLYNVWKPIGGSLQRFGY
CCCCCEEEECHHHCCCCCCCCCHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHEE
YTAQHGSGIPRPTCPAGGTPMIVVTPANFAVDPTTVVNYGAWGSGPWTVYIMDGSNAGIG
EEECCCCCCCCCCCCCCCCCEEEEECCCCEECCCCEEEECCCCCCCEEEEEECCCCCCCC
GATATVGTYCGY
CCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3029698; 2623084 [H]