Click here to switch to the map view.

The map label for this gene is trbI [H]

Identifier: 187928612

GI number: 187928612

Start: 1620722

End: 1621933

Strand: Direct

Name: trbI [H]

Synonym: Rpic_1528

Alternate gene names: 187928612

Gene position: 1620722-1621933 (Clockwise)

Preceding gene: 187928611

Following gene: 187928613

Centisome position: 41.11

GC content: 60.89

Gene sequence:

>1212_bases
GTGGCTAAGCAGGTTGAGGACGTGACCGACGCTCGCGAGCGAGTCTCCAAGGGGAAGATCCCCAAAGGGATTATCTACGT
CGCAGCAGGCATTGCTGCGGTGCTGATCGGCACGCTTGCCTTCTACTACCAGAGCAAAACCGACGCCGAAGTGAAAGAGG
CGTCGGAGGAGCAGCGCGCGGAGAAGATGAAATCGCGGGCGACGGCGGGTGAGGCGTCGCAGAACCTCGGCCAGCAGATC
CGTGCCCAGCAGCAGGCCGCCAAGGATGAGGCGTCCCGCCAAGAGGCCTCTGCGGTAAGAGCCGACTCCGGTCAGCGCGC
ACCGGTCATGTCGGCGAAAGACTTCACGACGGGCCGTCAGGGCACCGAGGTGATGGGGAAGAAGAATGAAGAGGACAGCA
TCTTTACTGCGCCGCTCTACAAGGCAGGCATGAACAAGGTGCGTGACAACGCACGCCCGAAAGTCGACCTTCAAGGTACG
CTGGACCCTGCGTCCATGCGGGCGATGCAGCAGGCTGCCGCAGCGGCTGCCAACGCAACCGGCGCACCGCCTGCTGATGC
TGCGCCCGTCAACAGCGATCAACAGTTTCTGAAACAGACAGCAGCAACGAAGTACGAGCGCACAGGTATTGCGGGCCGTT
TGCCGAGTTGCACCGTATCCCAGGGCTTTGTGATTCCAGCGACGTTTGTCGGCGGCAACAACTCGGATAAGCCGGGCGAG
TTTCGCGCGATGGTGTCGCAGAACGTATGGGACACGGTGGATGGCACCTGCCTCGCGATTCCGGCAGGTTCGATGCTGGT
TGGGACTTACAGCAGCGACATCAGCATCGGGCAGGAGCGCCTTCTCGTGGCGTTCACCCGTCTGCAGCTCCCCAATAAGA
AGTGGGTTCCTCTCGGCTCGATGCAGGGTGCCGACACCAATGGCTATTCCGGTGTGAGCGGGGACGTCAACAACCATTTC
TTCAAGATCTTCTATGGCGCGGTTGTCATCGCCGTGCTGGAGCAACGCTTCAACAATCAGCAGACGGCGACGACCTCCAA
TTCGAACGGCCTGACTACTTACGGCAACGCGGCGGGCCAGGTCGCCACACAGACGGCGCAGACCATCCTGAACCGCAACC
AGAACATTCGGCCGACCATCACCACGGAACCTGCCCAGAAGCTGTTGGTACAGGTCAAGCAAGACATCGTCCTGGAGCCG
TACCGTGAATAG

Upstream 100 bases:

>100_bases
CAGCGCCTGGCAGAGACCGTGGCGCTTCGGTCGGGTAGCACGGAGGTGATCGTGCGCCGCGGCCGCGGTCGCTTCTTGGG
TCTCTTCTAAAGGATCGGCC

Downstream 100 bases:

>100_bases
GGCGATTGGGCTTCTCCTGATGGCGGCCTGTGTGTCCGCGCACGCCGTGGTGGTCGATGCGGTGATTTCACCGACGGCCT
ACGTCGTGCGCGACGGTGGA

Product: conjugation TrbI family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MAKQVEDVTDARERVSKGKIPKGIIYVAAGIAAVLIGTLAFYYQSKTDAEVKEASEEQRAEKMKSRATAGEASQNLGQQI
RAQQQAAKDEASRQEASAVRADSGQRAPVMSAKDFTTGRQGTEVMGKKNEEDSIFTAPLYKAGMNKVRDNARPKVDLQGT
LDPASMRAMQQAAAAAANATGAPPADAAPVNSDQQFLKQTAATKYERTGIAGRLPSCTVSQGFVIPATFVGGNNSDKPGE
FRAMVSQNVWDTVDGTCLAIPAGSMLVGTYSSDISIGQERLLVAFTRLQLPNKKWVPLGSMQGADTNGYSGVSGDVNNHF
FKIFYGAVVIAVLEQRFNNQQTATTSNSNGLTTYGNAAGQVATQTAQTILNRNQNIRPTITTEPAQKLLVQVKQDIVLEP
YRE

Sequences:

>Translated_403_residues
MAKQVEDVTDARERVSKGKIPKGIIYVAAGIAAVLIGTLAFYYQSKTDAEVKEASEEQRAEKMKSRATAGEASQNLGQQI
RAQQQAAKDEASRQEASAVRADSGQRAPVMSAKDFTTGRQGTEVMGKKNEEDSIFTAPLYKAGMNKVRDNARPKVDLQGT
LDPASMRAMQQAAAAAANATGAPPADAAPVNSDQQFLKQTAATKYERTGIAGRLPSCTVSQGFVIPATFVGGNNSDKPGE
FRAMVSQNVWDTVDGTCLAIPAGSMLVGTYSSDISIGQERLLVAFTRLQLPNKKWVPLGSMQGADTNGYSGVSGDVNNHF
FKIFYGAVVIAVLEQRFNNQQTATTSNSNGLTTYGNAAGQVATQTAQTILNRNQNIRPTITTEPAQKLLVQVKQDIVLEP
YRE
>Mature_402_residues
AKQVEDVTDARERVSKGKIPKGIIYVAAGIAAVLIGTLAFYYQSKTDAEVKEASEEQRAEKMKSRATAGEASQNLGQQIR
AQQQAAKDEASRQEASAVRADSGQRAPVMSAKDFTTGRQGTEVMGKKNEEDSIFTAPLYKAGMNKVRDNARPKVDLQGTL
DPASMRAMQQAAAAAANATGAPPADAAPVNSDQQFLKQTAATKYERTGIAGRLPSCTVSQGFVIPATFVGGNNSDKPGEF
RAMVSQNVWDTVDGTCLAIPAGSMLVGTYSSDISIGQERLLVAFTRLQLPNKKWVPLGSMQGADTNGYSGVSGDVNNHFF
KIFYGAVVIAVLEQRFNNQQTATTSNSNGLTTYGNAAGQVATQTAQTILNRNQNIRPTITTEPAQKLLVQVKQDIVLEPY
RE

Specific function: Unknown

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 43150; Mature: 43019

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQVEDVTDARERVSKGKIPKGIIYVAAGIAAVLIGTLAFYYQSKTDAEVKEASEEQRA
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
EKMKSRATAGEASQNLGQQIRAQQQAAKDEASRQEASAVRADSGQRAPVMSAKDFTTGRQ
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
GTEVMGKKNEEDSIFTAPLYKAGMNKVRDNARPKVDLQGTLDPASMRAMQQAAAAAANAT
CHHHHCCCCCCCCEEECHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCCCC
GAPPADAAPVNSDQQFLKQTAATKYERTGIAGRLPSCTVSQGFVIPATFVGGNNSDKPGE
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHH
FRAMVSQNVWDTVDGTCLAIPAGSMLVGTYSSDISIGQERLLVAFTRLQLPNKKWVPLGS
HHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCHHCHHHHHHHHHHHCCCCCCCCCCCC
MQGADTNGYSGVSGDVNNHFFKIFYGAVVIAVLEQRFNNQQTATTSNSNGLTTYGNAAGQ
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCHH
VATQTAQTILNRNQNIRPTITTEPAQKLLVQVKQDIVLEPYRE
HHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AKQVEDVTDARERVSKGKIPKGIIYVAAGIAAVLIGTLAFYYQSKTDAEVKEASEEQRA
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
EKMKSRATAGEASQNLGQQIRAQQQAAKDEASRQEASAVRADSGQRAPVMSAKDFTTGRQ
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
GTEVMGKKNEEDSIFTAPLYKAGMNKVRDNARPKVDLQGTLDPASMRAMQQAAAAAANAT
CHHHHCCCCCCCCEEECHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCCCC
GAPPADAAPVNSDQQFLKQTAATKYERTGIAGRLPSCTVSQGFVIPATFVGGNNSDKPGE
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHH
FRAMVSQNVWDTVDGTCLAIPAGSMLVGTYSSDISIGQERLLVAFTRLQLPNKKWVPLGS
HHHHHHCCCCCCCCCCEEEECCCCEEEEECCCCCHHCHHHHHHHHHHHCCCCCCCCCCCC
MQGADTNGYSGVSGDVNNHFFKIFYGAVVIAVLEQRFNNQQTATTSNSNGLTTYGNAAGQ
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCHH
VATQTAQTILNRNQNIRPTITTEPAQKLLVQVKQDIVLEPYRE
HHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]