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The map label for this gene is dgdR [H]

Identifier: 187928576

GI number: 187928576

Start: 1582152

End: 1582967

Strand: Direct

Name: dgdR [H]

Synonym: Rpic_1492

Alternate gene names: 187928576

Gene position: 1582152-1582967 (Clockwise)

Preceding gene: 187928567

Following gene: 187928581

Centisome position: 40.13

GC content: 65.07

Gene sequence:

>816_bases
ATGTCCTTGTCCTTTACGGGCACGATCAGCCGGGCGGCAGATCTCGTGCACCGCTCGCAATCGGCGGTGAGCATGCAGAT
CAAGACGCTGGAATCGGCCCTTGGCAAAGCGCTGTTCGTGCGCAAGCCGCGCAGCGTGGTGCCGACGCAGGACGGCGAGG
TGCTGCTGGCACACGCGCGCCGGATCATTGCGCTGCGCGATGAGGCATGGGCGGCGGTCGTCCGGCCGGACGTGACTGGC
CGCGTGGTGATCGGCGTACCGGACGATTACGCGTCGTCGCTGTTTCCGCCGATTCTCAAGAAGTTCTCGGCCACCTATCC
GAAGGTCGAGATCCAGGTGACCGGCCTGCCCAGCGTCGCGCTCGCCCCGATGTTGCGCGACGGCACGGTGGATCTCGTCT
GCGCGACGCGGGTGAAAGGGCTGACCGGCGAGTTCTTGCGGCACGAGCCGATGGTGTGGGCCGCAGCGCCCGGCGCCACT
GACATCTGGCGTGAGCGGCCGCTACCAATTGCCGTGTTCCTACCGGGAAGCGTCGCACGCGAGAAGGCGATCCACAGTCT
CGAGCGCGCAAAAATCGTGTATCGAACTTCCTATGAGAGCCCGAGTCTGCTTGGCCTGCTGACGATGGCCCGAACTGGCC
TCGCCATCACCCCGCTCGCGCGGTGTGCTGTGCCATCTGACTTTACGCTGCTCGGGCCCGCACACGGCCTGCCTGAGATT
GGCACGCTTGAAATCGTCCTCGCCCGAAGCGTCACGTCAAACCGACCACCCTGCGATTTTCTCGCCGAGCGCATCGTCGC
TGAACTTCACGCATGA

Upstream 100 bases:

>100_bases
CCACTGCATCAGAAAAATATGCGCAGTGTCTCCTGCCAGTTCTTGCGGCGATGTTTTTGCCGGCAGCACGCTGAGGGTTG
GGGTGCAGCCCTCTCAACAA

Downstream 100 bases:

>100_bases
GCGCGCCTCGCCCGACGCCCAACCGGGGGCCGGGACTCAGTATTTCCAGCGTGATGGAGCAATTTTTCGACTCCACGGCA
ATCACGCGAGTGACGCCGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MSLSFTGTISRAADLVHRSQSAVSMQIKTLESALGKALFVRKPRSVVPTQDGEVLLAHARRIIALRDEAWAAVVRPDVTG
RVVIGVPDDYASSLFPPILKKFSATYPKVEIQVTGLPSVALAPMLRDGTVDLVCATRVKGLTGEFLRHEPMVWAAAPGAT
DIWRERPLPIAVFLPGSVAREKAIHSLERAKIVYRTSYESPSLLGLLTMARTGLAITPLARCAVPSDFTLLGPAHGLPEI
GTLEIVLARSVTSNRPPCDFLAERIVAELHA

Sequences:

>Translated_271_residues
MSLSFTGTISRAADLVHRSQSAVSMQIKTLESALGKALFVRKPRSVVPTQDGEVLLAHARRIIALRDEAWAAVVRPDVTG
RVVIGVPDDYASSLFPPILKKFSATYPKVEIQVTGLPSVALAPMLRDGTVDLVCATRVKGLTGEFLRHEPMVWAAAPGAT
DIWRERPLPIAVFLPGSVAREKAIHSLERAKIVYRTSYESPSLLGLLTMARTGLAITPLARCAVPSDFTLLGPAHGLPEI
GTLEIVLARSVTSNRPPCDFLAERIVAELHA
>Mature_270_residues
SLSFTGTISRAADLVHRSQSAVSMQIKTLESALGKALFVRKPRSVVPTQDGEVLLAHARRIIALRDEAWAAVVRPDVTGR
VVIGVPDDYASSLFPPILKKFSATYPKVEIQVTGLPSVALAPMLRDGTVDLVCATRVKGLTGEFLRHEPMVWAAAPGATD
IWRERPLPIAVFLPGSVAREKAIHSLERAKIVYRTSYESPSLLGLLTMARTGLAITPLARCAVPSDFTLLGPAHGLPEIG
TLEIVLARSVTSNRPPCDFLAERIVAELHA

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=250, Percent_Identity=30.4, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI1788297, Length=151, Percent_Identity=31.7880794701987, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790262, Length=151, Percent_Identity=31.1258278145695, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787806, Length=125, Percent_Identity=28.8, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790208, Length=150, Percent_Identity=32, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1790399, Length=233, Percent_Identity=29.6137339055794, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 29241; Mature: 29109

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSFTGTISRAADLVHRSQSAVSMQIKTLESALGKALFVRKPRSVVPTQDGEVLLAHAR
CCEEECCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEHH
RIIALRDEAWAAVVRPDVTGRVVIGVPDDYASSLFPPILKKFSATYPKVEIQVTGLPSVA
EEEEECCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHH
LAPMLRDGTVDLVCATRVKGLTGEFLRHEPMVWAAAPGATDIWRERPLPIAVFLPGSVAR
HHHHHCCCCEEEEEECHHCCCCHHHHHCCCEEEEECCCCHHHHHCCCCCEEEECCCHHHH
EKAIHSLERAKIVYRTSYESPSLLGLLTMARTGLAITPLARCAVPSDFTLLGPAHGLPEI
HHHHHHHHHHEEEEEECCCCCHHHHHHHHHHCCCEECCHHHHCCCCCCEEECCCCCCCCC
GTLEIVLARSVTSNRPPCDFLAERIVAELHA
CCEEEEEEEHHCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLSFTGTISRAADLVHRSQSAVSMQIKTLESALGKALFVRKPRSVVPTQDGEVLLAHAR
CEEECCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEHH
RIIALRDEAWAAVVRPDVTGRVVIGVPDDYASSLFPPILKKFSATYPKVEIQVTGLPSVA
EEEEECCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHH
LAPMLRDGTVDLVCATRVKGLTGEFLRHEPMVWAAAPGATDIWRERPLPIAVFLPGSVAR
HHHHHCCCCEEEEEECHHCCCCHHHHHCCCEEEEECCCCHHHHHCCCCCEEEECCCHHHH
EKAIHSLERAKIVYRTSYESPSLLGLLTMARTGLAITPLARCAVPSDFTLLGPAHGLPEI
HHHHHHHHHHEEEEEECCCCCHHHHHHHHHHCCCEECCHHHHCCCCCCEEECCCCCCCCC
GTLEIVLARSVTSNRPPCDFLAERIVAELHA
CCEEEEEEEHHCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]