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The map label for this gene is xylZ [H]

Identifier: 187928453

GI number: 187928453

Start: 1464147

End: 1465175

Strand: Direct

Name: xylZ [H]

Synonym: Rpic_1366

Alternate gene names: 187928453

Gene position: 1464147-1465175 (Clockwise)

Preceding gene: 187928452

Following gene: 187928454

Centisome position: 37.14

GC content: 62.49

Gene sequence:

>1029_bases
ATGTCCAGTTTCACAGTCGCATTGAACTTCGAAGACGGCGTGACCCGCTTCATCGATTGCAAAGCGGGGGAGAAGGTGCT
CGATGCCGCCTTCCGCGCCAAGATCAACCTGCCCATGGATTGCTCCGATGGCGTCTGCGGGACCTGCAAGTGCCGCGCCG
AGAGCGGAACCTACGACCTTGGCGACGATTACATTGAAGACGCCCTGACCGAAGACGAGAAGAACACCGGCCTTGTGCTG
ACGTGCCAGATGGTGCCGCAAAGCGATTGCGTGATCGCGGTGCCGACCTCGTCGACCGCCTGCAAAACGGGGCAGAGCAC
GTTCGGCGCAACGGTGTCGAACGTCGAGTTGCACAACGATGCCGCCGTGGTGCTCGAGCTGGACGTGGATGCCACGGCGC
CGGTGTTCCTGCCCGGCCAGTACGTCAACATCGGTGTGCCGGGAAGCGGCCAGCACCGCTCGTATTCGTTCTCCTCAGCG
CCCGGTGAAACGAAGATCAGCTTTCTGATCAAGAAGATTCCCGGCGGCGTGATGAGCACCTGGCTCGAAGCCGCAAAGCC
GGGCGACAAGCTCGATTTGCAGGGGCCGCTGGGCAGCTTCTACCTGCGTGATGTGCAGCGGCCGCTGTTGTTCCTGGCCG
GCGGCACCGGCCTTGCGCCGTTCCTGTCGATGCTCGAAGTGCTGGCGCGCAGCAACTCGCAGCAGCACGTGCATCTGATC
TACGGCGTGACCCGTGATCTCGACCTGGTACAGGTCGACGCGATCGATGCCTATGTGGCGCGGTTGCCGAACTTCAGCTA
CGCCACCGTCGTCGCCGACGCCGCGTCGAATCATCCGCGCAAGGGTTGGGTGACGCAGCACATTCCGGCCAACGCGCTGA
ACGATGGCGACGTTGATGTCTACCTGTGCGGGCCGCCGCCGATGGTAGACGCCGTGCGCAAGTACTTTGACGACCAAGGC
GTGAAACCCAAGAGCTTCCACTACGAGAAGTTCACGCCCAATGCAGTACCGGAGGCGAAGGCGGCATGA

Upstream 100 bases:

>100_bases
CATCCAAGAAGATCGTCCTGAAGAACGACTACATCCGGCAGGTGCTCGACGTCTATCACGTCTGACGAGCACACCCGTAT
CCAAGGCAGTGAGGTATTCC

Downstream 100 bases:

>100_bases
GCACGCAACGATTTTCAGGCAAGGCCGTCGTGGTGACGGGCGCAGCGCAGGGCATCGGCCGTGGCGTGGCAGTGGCTGCG
GCAGAAGAGGGGGCGCACGT

Product: oxidoreductase FAD/NAD(P)-binding domain-containing protein

Products: NA

Alternate protein names: Ferredoxin; Ferredoxin--NAD(+) reductase [H]

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MSSFTVALNFEDGVTRFIDCKAGEKVLDAAFRAKINLPMDCSDGVCGTCKCRAESGTYDLGDDYIEDALTEDEKNTGLVL
TCQMVPQSDCVIAVPTSSTACKTGQSTFGATVSNVELHNDAAVVLELDVDATAPVFLPGQYVNIGVPGSGQHRSYSFSSA
PGETKISFLIKKIPGGVMSTWLEAAKPGDKLDLQGPLGSFYLRDVQRPLLFLAGGTGLAPFLSMLEVLARSNSQQHVHLI
YGVTRDLDLVQVDAIDAYVARLPNFSYATVVADAASNHPRKGWVTQHIPANALNDGDVDVYLCGPPPMVDAVRKYFDDQG
VKPKSFHYEKFTPNAVPEAKAA

Sequences:

>Translated_342_residues
MSSFTVALNFEDGVTRFIDCKAGEKVLDAAFRAKINLPMDCSDGVCGTCKCRAESGTYDLGDDYIEDALTEDEKNTGLVL
TCQMVPQSDCVIAVPTSSTACKTGQSTFGATVSNVELHNDAAVVLELDVDATAPVFLPGQYVNIGVPGSGQHRSYSFSSA
PGETKISFLIKKIPGGVMSTWLEAAKPGDKLDLQGPLGSFYLRDVQRPLLFLAGGTGLAPFLSMLEVLARSNSQQHVHLI
YGVTRDLDLVQVDAIDAYVARLPNFSYATVVADAASNHPRKGWVTQHIPANALNDGDVDVYLCGPPPMVDAVRKYFDDQG
VKPKSFHYEKFTPNAVPEAKAA
>Mature_341_residues
SSFTVALNFEDGVTRFIDCKAGEKVLDAAFRAKINLPMDCSDGVCGTCKCRAESGTYDLGDDYIEDALTEDEKNTGLVLT
CQMVPQSDCVIAVPTSSTACKTGQSTFGATVSNVELHNDAAVVLELDVDATAPVFLPGQYVNIGVPGSGQHRSYSFSSAP
GETKISFLIKKIPGGVMSTWLEAAKPGDKLDLQGPLGSFYLRDVQRPLLFLAGGTGLAPFLSMLEVLARSNSQQHVHLIY
GVTRDLDLVQVDAIDAYVARLPNFSYATVVADAASNHPRKGWVTQHIPANALNDGDVDVYLCGPPPMVDAVRKYFDDQGV
KPKSFHYEKFTPNAVPEAKAA

Specific function: Electron transfer component of toluate 1,2-dioxygenase system [H]

COG id: COG0543

COG function: function code HC; 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding FR-type domain [H]

Homologues:

Organism=Escherichia coli, GI1787098, Length=204, Percent_Identity=30.3921568627451, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788903, Length=213, Percent_Identity=27.6995305164319, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787658, Length=241, Percent_Identity=29.4605809128631, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790359, Length=224, Percent_Identity=24.5535714285714, Blast_Score=62, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6322146, Length=201, Percent_Identity=29.3532338308458, Blast_Score=84, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6321673, Length=215, Percent_Identity=25.5813953488372, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6323552, Length=188, Percent_Identity=26.063829787234, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR017927
- InterPro:   IPR001041
- InterPro:   IPR001709
- InterPro:   IPR008333
- InterPro:   IPR001433
- InterPro:   IPR001221
- InterPro:   IPR017938 [H]

Pfam domain/function: PF00970 FAD_binding_6; PF00111 Fer2; PF00175 NAD_binding_1 [H]

EC number: =1.18.1.3 [H]

Molecular weight: Translated: 36706; Mature: 36575

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSFTVALNFEDGVTRFIDCKAGEKVLDAAFRAKINLPMDCSDGVCGTCKCRAESGTYDL
CCCEEEEEECCCCCEEEEECCCCHHHHHHHHHEEECCCCCCCCCCCEEEEEECCCCCCCC
GDDYIEDALTEDEKNTGLVLTCQMVPQSDCVIAVPTSSTACKTGQSTFGATVSNVELHND
CHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCC
AAVVLELDVDATAPVFLPGQYVNIGVPGSGQHRSYSFSSAPGETKISFLIKKIPGGVMST
EEEEEEEECCCCCCEEECCCEEEEECCCCCCCCCEECCCCCCCHHHHHHHHHCCCHHHHH
WLEAAKPGDKLDLQGPLGSFYLRDVQRPLLFLAGGTGLAPFLSMLEVLARSNSQQHVHLI
HHHHCCCCCCEEECCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEE
YGVTRDLDLVQVDAIDAYVARLPNFSYATVVADAASNHPRKGWVTQHIPANALNDGDVDV
EEECCCCCEEEEHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEECCCCCCCCCCCCEEE
YLCGPPPMVDAVRKYFDDQGVKPKSFHYEKFTPNAVPEAKAA
EEECCCCHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
SSFTVALNFEDGVTRFIDCKAGEKVLDAAFRAKINLPMDCSDGVCGTCKCRAESGTYDL
CCEEEEEECCCCCEEEEECCCCHHHHHHHHHEEECCCCCCCCCCCEEEEEECCCCCCCC
GDDYIEDALTEDEKNTGLVLTCQMVPQSDCVIAVPTSSTACKTGQSTFGATVSNVELHND
CHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCC
AAVVLELDVDATAPVFLPGQYVNIGVPGSGQHRSYSFSSAPGETKISFLIKKIPGGVMST
EEEEEEEECCCCCCEEECCCEEEEECCCCCCCCCEECCCCCCCHHHHHHHHHCCCHHHHH
WLEAAKPGDKLDLQGPLGSFYLRDVQRPLLFLAGGTGLAPFLSMLEVLARSNSQQHVHLI
HHHHCCCCCCEEECCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEE
YGVTRDLDLVQVDAIDAYVARLPNFSYATVVADAASNHPRKGWVTQHIPANALNDGDVDV
EEECCCCCEEEEHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEECCCCCCCCCCCCEEE
YLCGPPPMVDAVRKYFDDQGVKPKSFHYEKFTPNAVPEAKAA
EEECCCCHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938949 [H]