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The map label for this gene is yhjC [H]

Identifier: 187928444

GI number: 187928444

Start: 1452813

End: 1453781

Strand: Reverse

Name: yhjC [H]

Synonym: Rpic_1357

Alternate gene names: 187928444

Gene position: 1453781-1452813 (Counterclockwise)

Preceding gene: 187928446

Following gene: 187928443

Centisome position: 36.87

GC content: 67.18

Gene sequence:

>969_bases
ATGATGCGAACGACGGACTGGAACGACTGGGACACTTTTTGCACCGTGGCCACGCTCGGCAGCTTTACGCGCGCGGCGGA
GCGGCTGGGGTTGCCCAAATCGTCGGTCAGCACGGCGGTGTCGCGGCTGGAAGGCAAGATGGGCGCACGCCTTTTCGAGC
GCAGTACGCGCCGCCTGCGCCTGACCGATGCCGGCGAAGCCCTGCTGCGCGACGCAGGCCCATTGTTCCAGCGGCTGCGC
GAAGTTTCGGAAGACGCCGCAGCGACGTTCCAGTCGCCCGCCGGCACGTTGCGCATTGCCATGCCGTACGAATTTGCCGC
CAAGCAGCTCGCCGAGGTGGTGCTGGAAGTCATGCGCGAGCACACTGGCTTACGCATCGAAGTGGACGTGGCACCACGCC
AGATCGACCCGCTCGCCCAGGGCTACGACATCATGCTGACCGTGCCGCGCGGGCCGCTGCCCGATTCCGGCCTCGTCGCG
CAGCGCGTCTTCGATTTGCGGCGCGCCGTGGTCGTCGCCCCGCAACTGCTGGAGCGCCTCGGGCCGCTCACCCACCCGGA
CCAACTCGCCGACTGGCCCTGCCTCGGTACCTCGAACGAAACCGAATGGCAATTCCGCACGCCTGGCGGCGAGACGATCA
ACCTGCCGCTCGACTTCCGCATGCGCACCTCCAATAGCGAACTGCGCATGCAGGCGGCCATTGCTGGCCTGGGTGTCGCC
CGCATCACCTCCGTGTTTGCCACCGACCTGATGGCTTCGGGCGCGCTGCAGGAGGTGCTGACGGGATTCCAATCTCCGCC
CATGCGCGTGTACGCCGTCTTCCCGGGCCGCCGCCTGATGCCCGCCAAGGTCAAGGTCTTCATGGACGCCCTTCACCGCC
GTATAGAGCATTCCCGCCAACACACCGACATGCGGCCCACGTTCGTAGACGAAGCCGCCGCGTCCTGGCCGCCCGAGTCG
CTGCTCTGA

Upstream 100 bases:

>100_bases
CGGCGGAGAAACCGTGTGGTCTGTGCTTGGCGTGTTCATGCAGGGATGGTAATTTGCCTCGAAACCGGCGGAAATCGCCT
GCCAACAAATTCATTGTTCA

Downstream 100 bases:

>100_bases
CTGTTCACTCCTCCCCTTGATCTCCGCGAAACCATGCGCCCGTTCACCAAACTCCCCATCTTGATTGTCGCGCTCGCTCT
GACCACCGTTGGCTGCTCCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MMRTTDWNDWDTFCTVATLGSFTRAAERLGLPKSSVSTAVSRLEGKMGARLFERSTRRLRLTDAGEALLRDAGPLFQRLR
EVSEDAAATFQSPAGTLRIAMPYEFAAKQLAEVVLEVMREHTGLRIEVDVAPRQIDPLAQGYDIMLTVPRGPLPDSGLVA
QRVFDLRRAVVVAPQLLERLGPLTHPDQLADWPCLGTSNETEWQFRTPGGETINLPLDFRMRTSNSELRMQAAIAGLGVA
RITSVFATDLMASGALQEVLTGFQSPPMRVYAVFPGRRLMPAKVKVFMDALHRRIEHSRQHTDMRPTFVDEAAASWPPES
LL

Sequences:

>Translated_322_residues
MMRTTDWNDWDTFCTVATLGSFTRAAERLGLPKSSVSTAVSRLEGKMGARLFERSTRRLRLTDAGEALLRDAGPLFQRLR
EVSEDAAATFQSPAGTLRIAMPYEFAAKQLAEVVLEVMREHTGLRIEVDVAPRQIDPLAQGYDIMLTVPRGPLPDSGLVA
QRVFDLRRAVVVAPQLLERLGPLTHPDQLADWPCLGTSNETEWQFRTPGGETINLPLDFRMRTSNSELRMQAAIAGLGVA
RITSVFATDLMASGALQEVLTGFQSPPMRVYAVFPGRRLMPAKVKVFMDALHRRIEHSRQHTDMRPTFVDEAAASWPPES
LL
>Mature_322_residues
MMRTTDWNDWDTFCTVATLGSFTRAAERLGLPKSSVSTAVSRLEGKMGARLFERSTRRLRLTDAGEALLRDAGPLFQRLR
EVSEDAAATFQSPAGTLRIAMPYEFAAKQLAEVVLEVMREHTGLRIEVDVAPRQIDPLAQGYDIMLTVPRGPLPDSGLVA
QRVFDLRRAVVVAPQLLERLGPLTHPDQLADWPCLGTSNETEWQFRTPGGETINLPLDFRMRTSNSELRMQAAIAGLGVA
RITSVFATDLMASGALQEVLTGFQSPPMRVYAVFPGRRLMPAKVKVFMDALHRRIEHSRQHTDMRPTFVDEAAASWPPES
LL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=30.952380952381, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1789639, Length=282, Percent_Identity=29.0780141843972, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1786401, Length=299, Percent_Identity=26.7558528428094, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI87081978, Length=291, Percent_Identity=26.4604810996564, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787128, Length=314, Percent_Identity=23.5668789808917, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1789173, Length=254, Percent_Identity=30.7086614173228, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787589, Length=298, Percent_Identity=27.1812080536913, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=23.1578947368421, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1790011, Length=320, Percent_Identity=23.4375, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788748, Length=147, Percent_Identity=32.6530612244898, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1786448, Length=283, Percent_Identity=28.6219081272085, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788481, Length=261, Percent_Identity=26.8199233716475, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35800; Mature: 35800

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRTTDWNDWDTFCTVATLGSFTRAAERLGLPKSSVSTAVSRLEGKMGARLFERSTRRLR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE
LTDAGEALLRDAGPLFQRLREVSEDAAATFQSPAGTLRIAMPYEFAAKQLAEVVLEVMRE
ECCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHH
HTGLRIEVDVAPRQIDPLAQGYDIMLTVPRGPLPDSGLVAQRVFDLRRAVVVAPQLLERL
CCCCEEEEECCCCCCCHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GPLTHPDQLADWPCLGTSNETEWQFRTPGGETINLPLDFRMRTSNSELRMQAAIAGLGVA
CCCCCCHHHCCCCCCCCCCCCCEEEECCCCCEEECCEEEEEECCCCHHHHHHHHHHHHHH
RITSVFATDLMASGALQEVLTGFQSPPMRVYAVFPGRRLMPAKVKVFMDALHRRIEHSRQ
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
HTDMRPTFVDEAAASWPPESLL
CCCCCCCHHHHHHCCCCCCCCC
>Mature Secondary Structure
MMRTTDWNDWDTFCTVATLGSFTRAAERLGLPKSSVSTAVSRLEGKMGARLFERSTRRLR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE
LTDAGEALLRDAGPLFQRLREVSEDAAATFQSPAGTLRIAMPYEFAAKQLAEVVLEVMRE
ECCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHH
HTGLRIEVDVAPRQIDPLAQGYDIMLTVPRGPLPDSGLVAQRVFDLRRAVVVAPQLLERL
CCCCEEEEECCCCCCCHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GPLTHPDQLADWPCLGTSNETEWQFRTPGGETINLPLDFRMRTSNSELRMQAAIAGLGVA
CCCCCCHHHCCCCCCCCCCCCCEEEECCCCCEEECCEEEEEECCCCHHHHHHHHHHHHHH
RITSVFATDLMASGALQEVLTGFQSPPMRVYAVFPGRRLMPAKVKVFMDALHRRIEHSRQ
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
HTDMRPTFVDEAAASWPPESLL
CCCCCCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]