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The map label for this gene is ybiT [H]

Identifier: 187928421

GI number: 187928421

Start: 1425694

End: 1427376

Strand: Direct

Name: ybiT [H]

Synonym: Rpic_1333

Alternate gene names: 187928421

Gene position: 1425694-1427376 (Clockwise)

Preceding gene: 187928420

Following gene: 187928422

Centisome position: 36.16

GC content: 62.69

Gene sequence:

>1683_bases
ATGGCGTCCGGTCAAGTGCTTGCCGCGCCAGATCACCGCTTTTCAAATCAAGGTTTCCACGTGCTTTCCACCGCCAACAT
CACCATGCAGTTCGGGCCCAAGCCCTTGTTCGAGAACATCTCGGTCAAGTTTGGCGAGGGCAATCGCTATGGCCTGATCG
GCGCCAACGGTTGCGGCAAGTCGACCTTCATGAAAATCCTGGGCGGCGATCTGGAGCCGAGCGCAGGCAACGTGATGCTG
GAACCGGGCGTGCGCCTGGGCAAGCTGCGTCAGGACCAGTTCGCCTACGAAGACATGCGCGTGCTGGACGTGGTGATGAT
GGGCCACACCGAAATGTGGGCCGCCGCGCAGGAGCGCGATGCCATCTACGCGAACCCGGAAGCCACTGACGACGACTACA
TGAAGGCCGCCGACCTGGAGGCCAAGTACGCCGAATACGACGGCTACACGGCGGAAGCGCGCGCGGGTGAACTGCTGATG
GGCGTGGGCATTCCGACCGACCAGCACAACGGCACGATGAGCAACGTTGCGCCCGGCTGGAAGCTGCGCGTGCTGCTGGC
GCAGGCGCTGTTCTCGAACCCGGACGTGCTGCTGCTGGACGAGCCGACCAACAACCTCGACATCAACACGATCCGCTGGC
TGGAATCGGTGCTCAACGAGCGCAACTCCACCATGATCATCATTTCCCACGATCGCCACTTCCTGAACTCGGTCTGCACG
CACATGGCCGACATGGATTACGGCACGCTCAAGGTCTACCCGGGCAACTACGACGACTACATGCAAGCCTCCCTGCAGGC
GCGCGAGCGCCTGCAGGCCGCCAACGCCCGGGCCAAGGAGCGCATCTCCGACCTGCAGGACTTCGTGCGTCGCTTCTCGG
CCAACAAGTCCAAGGCGCGCCAGGCTACGTCGCGCCTGAAGATGATCGACAAGATCAAGGTGGAAGACATCAAGCCGTCG
TCGCGCCAGAACCCGTTCGTCCGTTTCGAGATGGAGAAGAAGCTGCACAACCTGGCGGTGGAAACCGAGAACGCGCGCAA
GACGTACGACCGCAAGATTTTCGATGGCCTGACGATGGCCGTGCGGGCGGGCGAGCGGATCGCCATCATTGGTGAGAACG
GCGCGGGCAAGACCACGTTGCTGCGTTGCCTGCTGAACGGCGCCGTGAAGACCGGCGTGCAGCGCGGCATCGAGATCGAC
GGTGGCACCGTCAAGTGGGCCGAGAACGCCAATGTCGGCTACATGCCGCAGGACACCTACGAAGAATTCCCCGAAGACCG
CGACCTGATGGACTGGATGAGCCAGTGGACGCAAGCCGGCGATGACGACCAATCGCTGCGCGGCACCATGGGCCGCCTGT
TGTTCTCGGCCGACGACATCAAGAAGAGTGTGAAGGTGCTCTCCGGTGGCGAGAAGGGCCGCATGATCTGGGGCAAGCTC
ATGCTCGGCCGCCACAACGTGCTGGCGCTGGACGAGCCGACCAACCACATGGACATGGAGTCCATCGAGTCGCTGCAGAT
CGCGCTCGACAAGTTCGAAGGCACGCTGATCTTCGTGTCGCACGATCGCGAGTTGATCAGCGCCCTGGCCACGCGTGTGA
TCGAAGTGCGCCCGGACGGCACGCTCACCGACTACCTCGGCACCTACGACGAATACCTGCAGAGCCAGGGCGTCGAAGTC
TGA

Upstream 100 bases:

>100_bases
GCGGGCTTTACGCTGCACTTGTCGGGATACCCGACACTGAAGGCATAAGTCTTCCGGCCATCCGGGTCACGTCCGGGTGG
TAAAATCTCGGGTTCTCCAA

Downstream 100 bases:

>100_bases
CCCCCGATCTTTTGCCGTAGCCAAAGGGCCGCCGATGTGCGGCCTCTTTTTTTTTCGGGCGTCCCCGCGAGGCGAACATG
TGTTTCCGATCCGGATCGGT

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 560; Mature: 559

Protein sequence:

>560_residues
MASGQVLAAPDHRFSNQGFHVLSTANITMQFGPKPLFENISVKFGEGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVML
EPGVRLGKLRQDQFAYEDMRVLDVVMMGHTEMWAAAQERDAIYANPEATDDDYMKAADLEAKYAEYDGYTAEARAGELLM
GVGIPTDQHNGTMSNVAPGWKLRVLLAQALFSNPDVLLLDEPTNNLDINTIRWLESVLNERNSTMIIISHDRHFLNSVCT
HMADMDYGTLKVYPGNYDDYMQASLQARERLQAANARAKERISDLQDFVRRFSANKSKARQATSRLKMIDKIKVEDIKPS
SRQNPFVRFEMEKKLHNLAVETENARKTYDRKIFDGLTMAVRAGERIAIIGENGAGKTTLLRCLLNGAVKTGVQRGIEID
GGTVKWAENANVGYMPQDTYEEFPEDRDLMDWMSQWTQAGDDDQSLRGTMGRLLFSADDIKKSVKVLSGGEKGRMIWGKL
MLGRHNVLALDEPTNHMDMESIESLQIALDKFEGTLIFVSHDRELISALATRVIEVRPDGTLTDYLGTYDEYLQSQGVEV

Sequences:

>Translated_560_residues
MASGQVLAAPDHRFSNQGFHVLSTANITMQFGPKPLFENISVKFGEGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVML
EPGVRLGKLRQDQFAYEDMRVLDVVMMGHTEMWAAAQERDAIYANPEATDDDYMKAADLEAKYAEYDGYTAEARAGELLM
GVGIPTDQHNGTMSNVAPGWKLRVLLAQALFSNPDVLLLDEPTNNLDINTIRWLESVLNERNSTMIIISHDRHFLNSVCT
HMADMDYGTLKVYPGNYDDYMQASLQARERLQAANARAKERISDLQDFVRRFSANKSKARQATSRLKMIDKIKVEDIKPS
SRQNPFVRFEMEKKLHNLAVETENARKTYDRKIFDGLTMAVRAGERIAIIGENGAGKTTLLRCLLNGAVKTGVQRGIEID
GGTVKWAENANVGYMPQDTYEEFPEDRDLMDWMSQWTQAGDDDQSLRGTMGRLLFSADDIKKSVKVLSGGEKGRMIWGKL
MLGRHNVLALDEPTNHMDMESIESLQIALDKFEGTLIFVSHDRELISALATRVIEVRPDGTLTDYLGTYDEYLQSQGVEV
>Mature_559_residues
ASGQVLAAPDHRFSNQGFHVLSTANITMQFGPKPLFENISVKFGEGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVMLE
PGVRLGKLRQDQFAYEDMRVLDVVMMGHTEMWAAAQERDAIYANPEATDDDYMKAADLEAKYAEYDGYTAEARAGELLMG
VGIPTDQHNGTMSNVAPGWKLRVLLAQALFSNPDVLLLDEPTNNLDINTIRWLESVLNERNSTMIIISHDRHFLNSVCTH
MADMDYGTLKVYPGNYDDYMQASLQARERLQAANARAKERISDLQDFVRRFSANKSKARQATSRLKMIDKIKVEDIKPSS
RQNPFVRFEMEKKLHNLAVETENARKTYDRKIFDGLTMAVRAGERIAIIGENGAGKTTLLRCLLNGAVKTGVQRGIEIDG
GTVKWAENANVGYMPQDTYEEFPEDRDLMDWMSQWTQAGDDDQSLRGTMGRLLFSADDIKKSVKVLSGGEKGRMIWGKLM
LGRHNVLALDEPTNHMDMESIESLQIALDKFEGTLIFVSHDRELISALATRVIEVRPDGTLTDYLGTYDEYLQSQGVEV

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=547, Percent_Identity=31.6270566727605, Blast_Score=244, Evalue=1e-64,
Organism=Homo sapiens, GI27881506, Length=543, Percent_Identity=29.6500920810313, Blast_Score=226, Evalue=3e-59,
Organism=Homo sapiens, GI10947137, Length=543, Percent_Identity=29.097605893186, Blast_Score=226, Evalue=5e-59,
Organism=Homo sapiens, GI69354671, Length=539, Percent_Identity=27.6437847866419, Blast_Score=169, Evalue=6e-42,
Organism=Homo sapiens, GI10947135, Length=539, Percent_Identity=26.9016697588126, Blast_Score=169, Evalue=7e-42,
Organism=Escherichia coli, GI1787041, Length=540, Percent_Identity=64.8148148148148, Blast_Score=743, Evalue=0.0,
Organism=Escherichia coli, GI1789751, Length=530, Percent_Identity=31.8867924528302, Blast_Score=268, Evalue=1e-72,
Organism=Escherichia coli, GI1787182, Length=548, Percent_Identity=30.2919708029197, Blast_Score=229, Evalue=3e-61,
Organism=Escherichia coli, GI2367384, Length=531, Percent_Identity=28.6252354048964, Blast_Score=225, Evalue=5e-60,
Organism=Escherichia coli, GI1787029, Length=228, Percent_Identity=26.7543859649123, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI145693107, Length=537, Percent_Identity=22.3463687150838, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1788165, Length=196, Percent_Identity=28.0612244897959, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1789864, Length=245, Percent_Identity=23.6734693877551, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787712, Length=208, Percent_Identity=27.4038461538462, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1788761, Length=244, Percent_Identity=25, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=541, Percent_Identity=31.2384473197782, Blast_Score=232, Evalue=3e-61,
Organism=Caenorhabditis elegans, GI17555318, Length=541, Percent_Identity=28.8354898336414, Blast_Score=223, Evalue=3e-58,
Organism=Caenorhabditis elegans, GI17559834, Length=511, Percent_Identity=27.3972602739726, Blast_Score=189, Evalue=3e-48,
Organism=Caenorhabditis elegans, GI115533592, Length=211, Percent_Identity=27.4881516587678, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=197, Percent_Identity=26.9035532994924, Blast_Score=68, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6320874, Length=545, Percent_Identity=28.0733944954128, Blast_Score=223, Evalue=4e-59,
Organism=Saccharomyces cerevisiae, GI6321121, Length=558, Percent_Identity=28.1362007168459, Blast_Score=210, Evalue=5e-55,
Organism=Saccharomyces cerevisiae, GI6323278, Length=435, Percent_Identity=25.9770114942529, Blast_Score=116, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6325030, Length=435, Percent_Identity=24.1379310344828, Blast_Score=114, Evalue=3e-26,
Organism=Saccharomyces cerevisiae, GI6324314, Length=435, Percent_Identity=25.5172413793103, Blast_Score=113, Evalue=8e-26,
Organism=Drosophila melanogaster, GI24666836, Length=540, Percent_Identity=29.8148148148148, Blast_Score=238, Evalue=1e-62,
Organism=Drosophila melanogaster, GI24642252, Length=537, Percent_Identity=27.9329608938547, Blast_Score=225, Evalue=7e-59,
Organism=Drosophila melanogaster, GI18859989, Length=537, Percent_Identity=27.9329608938547, Blast_Score=225, Evalue=7e-59,
Organism=Drosophila melanogaster, GI24641342, Length=549, Percent_Identity=28.4153005464481, Blast_Score=210, Evalue=2e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 62611; Mature: 62480

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASGQVLAAPDHRFSNQGFHVLSTANITMQFGPKPLFENISVKFGEGNRYGLIGANGCGK
CCCCCEEECCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCH
STFMKILGGDLEPSAGNVMLEPGVRLGKLRQDQFAYEDMRVLDVVMMGHTEMWAAAQERD
HHHHHHHCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
AIYANPEATDDDYMKAADLEAKYAEYDGYTAEARAGELLMGVGIPTDQHNGTMSNVAPGW
CEEECCCCCCCHHHHHHCCCHHHHHCCCEECCCCCCCEEEECCCCCCCCCCCHHHCCCCH
KLRVLLAQALFSNPDVLLLDEPTNNLDINTIRWLESVLNERNSTMIIISHDRHFLNSVCT
HHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH
HMADMDYGTLKVYPGNYDDYMQASLQARERLQAANARAKERISDLQDFVRRFSANKSKAR
HHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
QATSRLKMIDKIKVEDIKPSSRQNPFVRFEMEKKLHNLAVETENARKTYDRKIFDGLTMA
HHHHHHHHHHHEEEECCCCCCCCCCEEEEEHHHHHHHHEECCCHHHHHHHHHHHHHHHHE
VRAGERIAIIGENGAGKTTLLRCLLNGAVKTGVQRGIEIDGGTVKWAENANVGYMPQDTY
EECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEECCCEEEEECCCCCCCCCCHHH
EEFPEDRDLMDWMSQWTQAGDDDQSLRGTMGRLLFSADDIKKSVKVLSGGEKGRMIWGKL
HHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCEEEEEE
MLGRHNVLALDEPTNHMDMESIESLQIALDKFEGTLIFVSHDRELISALATRVIEVRPDG
EECCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHEEEECCCC
TLTDYLGTYDEYLQSQGVEV
CHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ASGQVLAAPDHRFSNQGFHVLSTANITMQFGPKPLFENISVKFGEGNRYGLIGANGCGK
CCCCEEECCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCH
STFMKILGGDLEPSAGNVMLEPGVRLGKLRQDQFAYEDMRVLDVVMMGHTEMWAAAQERD
HHHHHHHCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
AIYANPEATDDDYMKAADLEAKYAEYDGYTAEARAGELLMGVGIPTDQHNGTMSNVAPGW
CEEECCCCCCCHHHHHHCCCHHHHHCCCEECCCCCCCEEEECCCCCCCCCCCHHHCCCCH
KLRVLLAQALFSNPDVLLLDEPTNNLDINTIRWLESVLNERNSTMIIISHDRHFLNSVCT
HHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH
HMADMDYGTLKVYPGNYDDYMQASLQARERLQAANARAKERISDLQDFVRRFSANKSKAR
HHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
QATSRLKMIDKIKVEDIKPSSRQNPFVRFEMEKKLHNLAVETENARKTYDRKIFDGLTMA
HHHHHHHHHHHEEEECCCCCCCCCCEEEEEHHHHHHHHEECCCHHHHHHHHHHHHHHHHE
VRAGERIAIIGENGAGKTTLLRCLLNGAVKTGVQRGIEIDGGTVKWAENANVGYMPQDTY
EECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEECCCEEEEECCCCCCCCCCHHH
EEFPEDRDLMDWMSQWTQAGDDDQSLRGTMGRLLFSADDIKKSVKVLSGGEKGRMIWGKL
HHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCEEEEEE
MLGRHNVLALDEPTNHMDMESIESLQIALDKFEGTLIFVSHDRELISALATRVIEVRPDG
EECCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHEEEECCCC
TLTDYLGTYDEYLQSQGVEV
CHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]