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The map label for this gene is ydcI [H]

Identifier: 187928405

GI number: 187928405

Start: 1411733

End: 1412677

Strand: Reverse

Name: ydcI [H]

Synonym: Rpic_1317

Alternate gene names: 187928405

Gene position: 1412677-1411733 (Counterclockwise)

Preceding gene: 187928409

Following gene: 187928401

Centisome position: 35.83

GC content: 69.21

Gene sequence:

>945_bases
ATGGAAAGTGCCCTCTCAGCGGATTTGCCGTCCCGCATCCGGTTTCGCCATCTGAGCTGCTTTGTCGCCATCGCGCAGGA
GCGCAACCTGCGGCGCGCCGCCGAGCGGTTGCATCTGAGCCAGCCGGCGGTATCGAAAACGCTGGGTGAACTGGAGGCGC
TGGCCGGCGTGCAGCTCGTGGAGCGCGGCCGGCAAGGCGCACGGCTCACTGCGGCTGGCGAGCAATTCCTGCGGCACGCG
GTCGGCGTGACGCAGGCGCTGGAATCGGCCGCCGCCGCGCTGATGGGATCGACGGACGCATCCGCGCCGGTCGTGCATGT
AGGCGCGCTGCCGACGGTGGCCAGCAGCCTGCTGCCCCGGGCGATTGCCCATTTGCACGCCCAGCGCCCGCATGCCGGCG
TGCGGTTGCGCACCGGTACCAATGTCGAGCTGCTGACTGCACTCAAGGCCGGCGAACTCGATTTCATCGTCGGGCGCATG
GCCGAGCCGGATCGCATGCAGGGGCTGTCGTTCGAGTTGCTGTATGCCGAGCCGCTGGCGCTGGTCGTCCGGCCCGGGCA
TCCGCTGTTGTCGCAGCCAGGCGCGTCGGCCTCGCTGCAGGCGGTGCTGGACTACCCGCTGGTGATTGCCACGCCGGGCA
CGGTGCCGCGCCATCACACCGAAGCGCTGTTCCAGACGCACGGGCTGCGCTTGCCCGCGGGCGTGACGGAAACGCTTTCG
GTGTCCGTCGCACGGTTGCTGGCATGCCGATCCGATGCGGTGTGGATCACCCCCGAGCGCGCTGCGGGCGACGACCTGGC
GCATGGTCAACTTGCCCGTCTGGACATTGCCACGTCCGGCACCAAGGAGCCCGTCGGCCTGCTGCGCAGAAGCGCCGTCA
CACCAAGCGAACTGGCCAGCGCGTTCATGGAACTGCTGACGGAGCTGGCGCAGACGCCCGACTGA

Upstream 100 bases:

>100_bases
GGGTCATGGGGCGTCTCCTTATGAAATCGTGCAGAGACTGTATCGCCGACAAAAAGTGAAGTAAATTGACTTCTTATCGG
AAAATCGATAACCCCAAGTT

Downstream 100 bases:

>100_bases
GCCGCCCTGCGCTCAAAAAAAAAATGCCGACTCCATGGCCGGCATTTCTTATTTCGATGCGCAGATCAGCGGTGTGCCAT
CTCCACGTCATAGGCAGCAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MESALSADLPSRIRFRHLSCFVAIAQERNLRRAAERLHLSQPAVSKTLGELEALAGVQLVERGRQGARLTAAGEQFLRHA
VGVTQALESAAAALMGSTDASAPVVHVGALPTVASSLLPRAIAHLHAQRPHAGVRLRTGTNVELLTALKAGELDFIVGRM
AEPDRMQGLSFELLYAEPLALVVRPGHPLLSQPGASASLQAVLDYPLVIATPGTVPRHHTEALFQTHGLRLPAGVTETLS
VSVARLLACRSDAVWITPERAAGDDLAHGQLARLDIATSGTKEPVGLLRRSAVTPSELASAFMELLTELAQTPD

Sequences:

>Translated_314_residues
MESALSADLPSRIRFRHLSCFVAIAQERNLRRAAERLHLSQPAVSKTLGELEALAGVQLVERGRQGARLTAAGEQFLRHA
VGVTQALESAAAALMGSTDASAPVVHVGALPTVASSLLPRAIAHLHAQRPHAGVRLRTGTNVELLTALKAGELDFIVGRM
AEPDRMQGLSFELLYAEPLALVVRPGHPLLSQPGASASLQAVLDYPLVIATPGTVPRHHTEALFQTHGLRLPAGVTETLS
VSVARLLACRSDAVWITPERAAGDDLAHGQLARLDIATSGTKEPVGLLRRSAVTPSELASAFMELLTELAQTPD
>Mature_314_residues
MESALSADLPSRIRFRHLSCFVAIAQERNLRRAAERLHLSQPAVSKTLGELEALAGVQLVERGRQGARLTAAGEQFLRHA
VGVTQALESAAAALMGSTDASAPVVHVGALPTVASSLLPRAIAHLHAQRPHAGVRLRTGTNVELLTALKAGELDFIVGRM
AEPDRMQGLSFELLYAEPLALVVRPGHPLLSQPGASASLQAVLDYPLVIATPGTVPRHHTEALFQTHGLRLPAGVTETLS
VSVARLLACRSDAVWITPERAAGDDLAHGQLARLDIATSGTKEPVGLLRRSAVTPSELASAFMELLTELAQTPD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=285, Percent_Identity=48.4210526315789, Blast_Score=262, Evalue=3e-71,
Organism=Escherichia coli, GI1787601, Length=260, Percent_Identity=30.7692307692308, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1788887, Length=179, Percent_Identity=34.0782122905028, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI157672245, Length=290, Percent_Identity=28.6206896551724, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790399, Length=178, Percent_Identity=32.5842696629214, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789506, Length=245, Percent_Identity=24.4897959183673, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788748, Length=170, Percent_Identity=31.1764705882353, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI145693105, Length=173, Percent_Identity=27.1676300578035, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787879, Length=205, Percent_Identity=28.780487804878, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1787530, Length=219, Percent_Identity=25.1141552511416, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788297, Length=306, Percent_Identity=27.7777777777778, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33266; Mature: 33266

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESALSADLPSRIRFRHLSCFVAIAQERNLRRAAERLHLSQPAVSKTLGELEALAGVQLV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
ERGRQGARLTAAGEQFLRHAVGVTQALESAAAALMGSTDASAPVVHVGALPTVASSLLPR
HCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHH
AIAHLHAQRPHAGVRLRTGTNVELLTALKAGELDFIVGRMAEPDRMQGLSFELLYAEPLA
HHHHHHHCCCCCCEEEECCCCEEEEEHHCCCCHHHHHCCCCCCHHHCCCEEEEEEECCEE
LVVRPGHPLLSQPGASASLQAVLDYPLVIATPGTVPRHHTEALFQTHGLRLPAGVTETLS
EEEECCCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHH
VSVARLLACRSDAVWITPERAAGDDLAHGQLARLDIATSGTKEPVGLLRRSAVTPSELAS
HHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCHHHHHH
AFMELLTELAQTPD
HHHHHHHHHHCCCC
>Mature Secondary Structure
MESALSADLPSRIRFRHLSCFVAIAQERNLRRAAERLHLSQPAVSKTLGELEALAGVQLV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
ERGRQGARLTAAGEQFLRHAVGVTQALESAAAALMGSTDASAPVVHVGALPTVASSLLPR
HCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHH
AIAHLHAQRPHAGVRLRTGTNVELLTALKAGELDFIVGRMAEPDRMQGLSFELLYAEPLA
HHHHHHHCCCCCCEEEECCCCEEEEEHHCCCCHHHHHCCCCCCHHHCCCEEEEEEECCEE
LVVRPGHPLLSQPGASASLQAVLDYPLVIATPGTVPRHHTEALFQTHGLRLPAGVTETLS
EEEECCCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHH
VSVARLLACRSDAVWITPERAAGDDLAHGQLARLDIATSGTKEPVGLLRRSAVTPSELAS
HHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCHHHHHH
AFMELLTELAQTPD
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]