Click here to switch to the map view.

The map label for this gene is rimP

Identifier: 187928208

GI number: 187928208

Start: 1190234

End: 1190722

Strand: Direct

Name: rimP

Synonym: Rpic_1115

Alternate gene names: 187928208

Gene position: 1190234-1190722 (Clockwise)

Preceding gene: 187928207

Following gene: 187928209

Centisome position: 30.19

GC content: 59.51

Gene sequence:

>489_bases
GTGCATCTGACTGATCTGATTGAGAAAACCCTCACCGCCATGGGGTACGAGCTGGTGGAAGTGGAGCGCGCGCCTGCCGG
GCTGCTGCGCGTGTATATCGATCAGGCAGAGAACGGCGTCGTCATTGAAGATTGCGAAAAAGTGAGTCATCAACTCACGC
GCGTGTTCGAAGTTGAAAACGTCAACTACGAACGGCTGGAAGTGTCGTCGCCTGGGCTGGACCGCCCGCTACGCACGCTG
GCCGACTTCACGCGCTTCGCCGGCCTTGAGGCCAAGGTGACGCTGCGCTTGCCGGTGGATGGACAGAAGAATTTCACGGG
AATCATTCAGGCTCCGACGGGCGAGCCAGGCCAGGAACGGATCGGCCTTGAGTTTGAGGGCAAGGAAGGCCCTGCGCTGC
TGGGATTCACGCTGTCGGAACTCGACCGCGCCCGGCTGGTGCCCGTGCTGGACTTCAAAGGAAATCGAAACAAAGGGAAC
AAGCAATGA

Upstream 100 bases:

>100_bases
AAAAGTCATCCTGCAGAAGATGGGCGAATGATATGGGCGTTGCGCCCATTTTTTTTTGCTTCAGCAGGTTGGCCATACCG
GGAAATTCTTCAGGAAAAAC

Downstream 100 bases:

>100_bases
GCCGCGAAGTTCTGTTGCTCGTCGATGCGCTTGCGCGCGAAAAAAACGTCGACAAGGATGTGGTGTTCGGGGCGCTGGAG
GCCGCATTGGCTTCGGCGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MHLTDLIEKTLTAMGYELVEVERAPAGLLRVYIDQAENGVVIEDCEKVSHQLTRVFEVENVNYERLEVSSPGLDRPLRTL
ADFTRFAGLEAKVTLRLPVDGQKNFTGIIQAPTGEPGQERIGLEFEGKEGPALLGFTLSELDRARLVPVLDFKGNRNKGN
KQ

Sequences:

>Translated_162_residues
MHLTDLIEKTLTAMGYELVEVERAPAGLLRVYIDQAENGVVIEDCEKVSHQLTRVFEVENVNYERLEVSSPGLDRPLRTL
ADFTRFAGLEAKVTLRLPVDGQKNFTGIIQAPTGEPGQERIGLEFEGKEGPALLGFTLSELDRARLVPVLDFKGNRNKGN
KQ
>Mature_162_residues
MHLTDLIEKTLTAMGYELVEVERAPAGLLRVYIDQAENGVVIEDCEKVSHQLTRVFEVENVNYERLEVSSPGLDRPLRTL
ADFTRFAGLEAKVTLRLPVDGQKNFTGIIQAPTGEPGQERIGLEFEGKEGPALLGFTLSELDRARLVPVLDFKGNRNKGN
KQ

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=151, Percent_Identity=42.3841059602649, Blast_Score=103, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_RALPJ (B2UAA1)

Other databases:

- EMBL:   CP001068
- RefSeq:   YP_001898695.1
- ProteinModelPortal:   B2UAA1
- SMR:   B2UAA1
- GeneID:   6288777
- GenomeReviews:   CP001068_GR
- KEGG:   rpi:Rpic_1115
- HOGENOM:   HBG668072
- OMA:   MGYELVE
- ProtClustDB:   PRK00092
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 18036; Mature: 18036

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLTDLIEKTLTAMGYELVEVERAPAGLLRVYIDQAENGVVIEDCEKVSHQLTRVFEVEN
CCHHHHHHHHHHHHCHHEEEECCCCHHEEEEEEECCCCCEEHHHHHHHHHHHHHHHHCCC
VNYERLEVSSPGLDRPLRTLADFTRFAGLEAKVTLRLPVDGQKNFTGIIQAPTGEPGQER
CCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCHH
IGLEFEGKEGPALLGFTLSELDRARLVPVLDFKGNRNKGNKQ
CCEEEECCCCCEEEEEEHHHCCHHHCCEEEECCCCCCCCCCC
>Mature Secondary Structure
MHLTDLIEKTLTAMGYELVEVERAPAGLLRVYIDQAENGVVIEDCEKVSHQLTRVFEVEN
CCHHHHHHHHHHHHCHHEEEECCCCHHEEEEEEECCCCCEEHHHHHHHHHHHHHHHHCCC
VNYERLEVSSPGLDRPLRTLADFTRFAGLEAKVTLRLPVDGQKNFTGIIQAPTGEPGQER
CCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCHH
IGLEFEGKEGPALLGFTLSELDRARLVPVLDFKGNRNKGNKQ
CCEEEECCCCCEEEEEEHHHCCHHHCCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA