| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
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The map label for this gene is 187928126
Identifier: 187928126
GI number: 187928126
Start: 1094281
End: 1097136
Strand: Direct
Name: 187928126
Synonym: Rpic_1033
Alternate gene names: NA
Gene position: 1094281-1097136 (Clockwise)
Preceding gene: 187928122
Following gene: 187928127
Centisome position: 27.76
GC content: 66.56
Gene sequence:
>2856_bases ATGCAGACGCTTGCCTTCGCGCCTGGCCCAGCATTCCTTTCCCGTGCCGCCGACGCTGCATGGCGCTTTCTGGATGCGCA TGCGCAATCCCCCGGTACCGCGACGATCGTCGTGCCGACAGCCGCGCAGATTCCCGGGGTGCGCAGTGCCCTGCATGCCA ATGCGCAAGCGGCCGGCACGCCGCGTTTGCTTCCGCGCATTCTGACCCTGGGGCATTGGCTGCTCGATTTGCCACCGGAA GCAGGTTCGCCCGCCGGGCGCACGCCGCTGTCGCGATTGCTTGCGGTGCAGCAGGCGCTCAAGACGCAGGCTTGGCTGCG TGAAGCGCTGGGCGCGCAGGACGATGCCGCCCTGTGGGGCGTAGCGCAGGTGCTCGTGACGGTGTCGGACGAGTTGTCGC AACGTTGGCTGACGCTTGATGCCGCACACAGTGGCGCAGATAGGCGGCCTGATGCGCTGGAGTCGGCGTTGGCGGAAGCG TTGGAGCGCACTTACGCACAATTGTCCGAACGCTTTCTCGGCACCGAATCGCGCATTGTGCTGACGTTCTGGCGGTTGCT TTCAGGCGCGGCGGACCCGATTCCAATGCGGCTGCGTGCCATGCGGCGCTTGCTGGACGAATTGCACGGCCCCATCGTCT GGATGAGCCCGTCGGACCCTGAGGCGGTCGATCTGGATTTCCTGCAGCGTGCCGCCGAGCGCGTGCCAGTGCTGAGCATC GGCTACGACTGGAATGCGCCCGAGGCCGGCACATCTGCGACGCCTTCCACGCATGCGGATTTCCGCGACTTGCTGCTGCA CGCCTGGCCTGAGTGCGCGACGGCCGCACAGGCTGCGGACGATGGCGCCGATGCGCGGATGCAGGCGCCAATCCTGCGCA TTGCTGGTGCTACACGCTTTGAGGACGAAGCGGCCTTCGCCGCGCATACGCTGGTCGATTGGTTGAACGCCGGGCGCCGC TCGTTGGCGTTGGTGGCGCAGGATCGCATCGTTGCGCGGCGCGTTCGCGCATTGTTGGCGCGCGTGAACGTGCCGGTGCG GGACGAGACCGGCTGGAAGCTTTCCACGACGCGCGCCGCCGCAGCGCTCATGCGCTGGGTCGACGTGGTGCAGGGCGATG GCGACACCGCTGCGCTCCTCGATCTCGTCAAAAGCCCTTTCTGTCTGCGTGACGCCGATGCCGGCACGGCCACGCCCGCA TGGGTCGCAGAACTGGAGCGCCGAGTGCGCCGGCACAACGTTTCGGGTGGCTGGGGGCGGCTGCGCCGGCTGGTGGCGGA TCGCCCCGCCAATGATGCCGATGCCGATGCCGATGGCGAAGCGAAGGTCAGCCGCCTGGCCGATCGCCTCGGCGTGCTGG CCGACGAAGCTGCGCTGTGGCGCCGTGTCGGCAGCGCGACGCTTGACGCGTGGGTAACGCTGCTGGCAGGCACGCTCGAT CGTCTGCATATGCGCACCGGCTTGCAGAACGACGACGCAGGGCGCCAATTGCTCGATTGGATCGACCGCCTGCGGGCATC CATACATGGCAGCACCGATGCGGGCGCGCGTTTTTCGCTCACGGAGTGGCGTGCACTGCTGTCGATGCTGCTCGAATCTG CGGTCTTCAGTGAGCCTTCACCGCCTGCTGATCGGCGTGTTGTCATCCTGCCGCTGAATGGTGCGCGCATGCGGCGCTTT GATGGTGTCGTGGTGGTGGGTTGCGACGATGCGCAGTTGCCGTCGGCGCAGCCGGAGTGGCTGTTTTTCTCCAACGACGT GCGCCGTGAACTGGGTTTGCCCGACCGCGCGCAGCGCTTTGCGCAGCAGGCGCGCGATTTGGCTGAAGTGTTGCTCAACC AGCCCGAGGTCGTGTTGACCTGGCAGCGCCACGGCGGACGCGGCGAGCCGCATCGCCTTTCCGGTTGGCTCGAACGCCTG CAACGCCGGTTGGCGGTGTGCGGCGTGCGTATTGATACGTCCGTCGTGTTGCCCAGCCTGCAGACCACGAGCCAACCAGC CGGCATGCCAGCGCCGGCCGCGCCTGTGCTGGTGCCGTCCACGCTGAGTGCGGCCGCGTACAACAGCCTGCGCCGCTGTC CGTACCAGTTTTTCGTTGGTCGCATGCTTCGCCTGGGCGAGCTGGAAGAGGTCTCCGACGAGCTGGAGAAACGCGACATC GGCGAAATCCTGCACGCAATCCTGCATCGCTTTCATCGGCAGTTGCTGGAAGTGCCGATGCATGACCCGGCTGATCGTCA GGCGCTCCTGCAGGCCATCACCGACGAACAGTTCGGCCCGCTGCTGGCCGAGGATGGCAACGCACTGCGCTTCTATCGGC GTTGGCTCGGTGTGATGCCGTCGTACCTGGCGTGGCAGGCCGCGCGCGAGGCTGACGGCTGGCGCTTTGAGGCTGGCGAG GTCGATGTCGATACGTCGATCACGTTGCGGGACGAGCGCCCGCTGCGCTTGCGCGGCCGTATCGACCGCATTGACGTGCA CGACGAACACGGCGTGGCGGTGCTTGATTACAAGACGCAATCGCAGATGGTGCTGGTGCGTCGCGCCAAGGCACCGTTTG AGGATTGCCAGCTCCCGTTTTATGGCGTGCTCGATGCGCGTGCAGTTGCGGGCGGCTGGGTTTCGCTCGACGGCGAGGCG CGCGGGGACAAGCGCGACGTTGCGTTGCCCGACTTCACGCAAGTCGTCGACTGGTTGATTGAACAGATGCAAAAGGACAT GACGGCTCTCTCAGCCGGTGCGCCGCTGCCGGCCTTCGGTGATGAATCGGCGTGCCGTTACTGCGCGGCGCGCGGCCTGT GCCGCAAGGGATACTGGACCGACGGTGCTCCGCGCGAGCCGGAGAGCGCGGCATGA
Upstream 100 bases:
>100_bases TACCGACGCCTCTATTTTCAACCGATTCGACTGTTGATTGTGGCTATCTCGCAGATAGCCGCAGGTCTTCGCTTCCCGGT ATATCGCCATATTCCCTCGC
Downstream 100 bases:
>100_bases GCGATCACGCTTACGAATGCGACGGCGCACCCGTCTCGCCTGAAGCCTTCTCGCGCGCTGCGTGCGAACCGCAGCGCTCG GTCGTGGTGGAAGCATGTGC
Product: hypothetical protein
Products: NA
Alternate protein names: DNA Helicase/Exodeoxyribonuclease V Subunit B; Exonuclease-Like Protein; Double-Strand Break Repair Protein; Homologous Recombinational Repair Protein; Exonuclease-Like; Helicase-Exonuclease Type V Family Protein AddB Subunit; Helicase C_term Recb Family Exonuclease; Helicase; Inactivated Superfamily I Helicase-Like Protein; ATP-Dependent Nuclease Subunit B-Like Protein; Helicase C_term RecB Family Exonuclease; Double-Strand Break Repair Protein Addb; Inactivated Superfamily I Helicase; ATP-Dependent Nuclease Subunit B
Number of amino acids: Translated: 951; Mature: 951
Protein sequence:
>951_residues MQTLAFAPGPAFLSRAADAAWRFLDAHAQSPGTATIVVPTAAQIPGVRSALHANAQAAGTPRLLPRILTLGHWLLDLPPE AGSPAGRTPLSRLLAVQQALKTQAWLREALGAQDDAALWGVAQVLVTVSDELSQRWLTLDAAHSGADRRPDALESALAEA LERTYAQLSERFLGTESRIVLTFWRLLSGAADPIPMRLRAMRRLLDELHGPIVWMSPSDPEAVDLDFLQRAAERVPVLSI GYDWNAPEAGTSATPSTHADFRDLLLHAWPECATAAQAADDGADARMQAPILRIAGATRFEDEAAFAAHTLVDWLNAGRR SLALVAQDRIVARRVRALLARVNVPVRDETGWKLSTTRAAAALMRWVDVVQGDGDTAALLDLVKSPFCLRDADAGTATPA WVAELERRVRRHNVSGGWGRLRRLVADRPANDADADADGEAKVSRLADRLGVLADEAALWRRVGSATLDAWVTLLAGTLD RLHMRTGLQNDDAGRQLLDWIDRLRASIHGSTDAGARFSLTEWRALLSMLLESAVFSEPSPPADRRVVILPLNGARMRRF DGVVVVGCDDAQLPSAQPEWLFFSNDVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPHRLSGWLERL QRRLAVCGVRIDTSVVLPSLQTTSQPAGMPAPAAPVLVPSTLSAAAYNSLRRCPYQFFVGRMLRLGELEEVSDELEKRDI GEILHAILHRFHRQLLEVPMHDPADRQALLQAITDEQFGPLLAEDGNALRFYRRWLGVMPSYLAWQAAREADGWRFEAGE VDVDTSITLRDERPLRLRGRIDRIDVHDEHGVAVLDYKTQSQMVLVRRAKAPFEDCQLPFYGVLDARAVAGGWVSLDGEA RGDKRDVALPDFTQVVDWLIEQMQKDMTALSAGAPLPAFGDESACRYCAARGLCRKGYWTDGAPREPESAA
Sequences:
>Translated_951_residues MQTLAFAPGPAFLSRAADAAWRFLDAHAQSPGTATIVVPTAAQIPGVRSALHANAQAAGTPRLLPRILTLGHWLLDLPPE AGSPAGRTPLSRLLAVQQALKTQAWLREALGAQDDAALWGVAQVLVTVSDELSQRWLTLDAAHSGADRRPDALESALAEA LERTYAQLSERFLGTESRIVLTFWRLLSGAADPIPMRLRAMRRLLDELHGPIVWMSPSDPEAVDLDFLQRAAERVPVLSI GYDWNAPEAGTSATPSTHADFRDLLLHAWPECATAAQAADDGADARMQAPILRIAGATRFEDEAAFAAHTLVDWLNAGRR SLALVAQDRIVARRVRALLARVNVPVRDETGWKLSTTRAAAALMRWVDVVQGDGDTAALLDLVKSPFCLRDADAGTATPA WVAELERRVRRHNVSGGWGRLRRLVADRPANDADADADGEAKVSRLADRLGVLADEAALWRRVGSATLDAWVTLLAGTLD RLHMRTGLQNDDAGRQLLDWIDRLRASIHGSTDAGARFSLTEWRALLSMLLESAVFSEPSPPADRRVVILPLNGARMRRF DGVVVVGCDDAQLPSAQPEWLFFSNDVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPHRLSGWLERL QRRLAVCGVRIDTSVVLPSLQTTSQPAGMPAPAAPVLVPSTLSAAAYNSLRRCPYQFFVGRMLRLGELEEVSDELEKRDI GEILHAILHRFHRQLLEVPMHDPADRQALLQAITDEQFGPLLAEDGNALRFYRRWLGVMPSYLAWQAAREADGWRFEAGE VDVDTSITLRDERPLRLRGRIDRIDVHDEHGVAVLDYKTQSQMVLVRRAKAPFEDCQLPFYGVLDARAVAGGWVSLDGEA RGDKRDVALPDFTQVVDWLIEQMQKDMTALSAGAPLPAFGDESACRYCAARGLCRKGYWTDGAPREPESAA >Mature_951_residues MQTLAFAPGPAFLSRAADAAWRFLDAHAQSPGTATIVVPTAAQIPGVRSALHANAQAAGTPRLLPRILTLGHWLLDLPPE AGSPAGRTPLSRLLAVQQALKTQAWLREALGAQDDAALWGVAQVLVTVSDELSQRWLTLDAAHSGADRRPDALESALAEA LERTYAQLSERFLGTESRIVLTFWRLLSGAADPIPMRLRAMRRLLDELHGPIVWMSPSDPEAVDLDFLQRAAERVPVLSI GYDWNAPEAGTSATPSTHADFRDLLLHAWPECATAAQAADDGADARMQAPILRIAGATRFEDEAAFAAHTLVDWLNAGRR SLALVAQDRIVARRVRALLARVNVPVRDETGWKLSTTRAAAALMRWVDVVQGDGDTAALLDLVKSPFCLRDADAGTATPA WVAELERRVRRHNVSGGWGRLRRLVADRPANDADADADGEAKVSRLADRLGVLADEAALWRRVGSATLDAWVTLLAGTLD RLHMRTGLQNDDAGRQLLDWIDRLRASIHGSTDAGARFSLTEWRALLSMLLESAVFSEPSPPADRRVVILPLNGARMRRF DGVVVVGCDDAQLPSAQPEWLFFSNDVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPHRLSGWLERL QRRLAVCGVRIDTSVVLPSLQTTSQPAGMPAPAAPVLVPSTLSAAAYNSLRRCPYQFFVGRMLRLGELEEVSDELEKRDI GEILHAILHRFHRQLLEVPMHDPADRQALLQAITDEQFGPLLAEDGNALRFYRRWLGVMPSYLAWQAAREADGWRFEAGE VDVDTSITLRDERPLRLRGRIDRIDVHDEHGVAVLDYKTQSQMVLVRRAKAPFEDCQLPFYGVLDARAVAGGWVSLDGEA RGDKRDVALPDFTQVVDWLIEQMQKDMTALSAGAPLPAFGDESACRYCAARGLCRKGYWTDGAPREPESAA
Specific function: Unknown
COG id: COG3893
COG function: function code L; Inactivated superfamily I helicase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 104632; Mature: 104632
Theoretical pI: Translated: 6.06; Mature: 6.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTLAFAPGPAFLSRAADAAWRFLDAHAQSPGTATIVVPTAAQIPGVRSALHANAQAAGT CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCHHHHHHCCCCCCCC PRLLPRILTLGHWLLDLPPEAGSPAGRTPLSRLLAVQQALKTQAWLREALGAQDDAALWG HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH VAQVLVTVSDELSQRWLTLDAAHSGADRRPDALESALAEALERTYAQLSERFLGTESRIV HHHHHHHHHHHHHHHHEEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH LTFWRLLSGAADPIPMRLRAMRRLLDELHGPIVWMSPSDPEAVDLDFLQRAAERVPVLSI HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCEEEE GYDWNAPEAGTSATPSTHADFRDLLLHAWPECATAAQAADDGADARMQAPILRIAGATRF CCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHCCHHHHCCCCCC EDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDETGWKLSTTRAA CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHH AALMRWVDVVQGDGDTAALLDLVKSPFCLRDADAGTATPAWVAELERRVRRHNVSGGWGR HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHH LRRLVADRPANDADADADGEAKVSRLADRLGVLADEAALWRRVGSATLDAWVTLLAGTLD HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RLHMRTGLQNDDAGRQLLDWIDRLRASIHGSTDAGARFSLTEWRALLSMLLESAVFSEPS HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCC PPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPEWLFFSNDVRRELGLPDRAQRF CCCCCEEEEEECCCCHHHHHCCEEEECCCCCCCCCCCCCEEEECCHHHHHCCCCHHHHHH AQQARDLAEVLLNQPEVVLTWQRHGGRGEPHRLSGWLERLQRRLAVCGVRIDTSVVLPSL HHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEECCHHCCCCC QTTSQPAGMPAPAAPVLVPSTLSAAAYNSLRRCPYQFFVGRMLRLGELEEVSDELEKRDI CCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHH GEILHAILHRFHRQLLEVPMHDPADRQALLQAITDEQFGPLLAEDGNALRFYRRWLGVMP HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCH SYLAWQAAREADGWRFEAGEVDVDTSITLRDERPLRLRGRIDRIDVHDEHGVAVLDYKTQ HHHHHHHHHCCCCCEEECCCEECCCEEEECCCCCCEECCCCCEEEECCCCCEEEEEECCC SQMVLVRRAKAPFEDCQLPFYGVLDARAVAGGWVSLDGEARGDKRDVALPDFTQVVDWLI CHHHHHHHHCCCHHHCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHH EQMQKDMTALSAGAPLPAFGDESACRYCAARGLCRKGYWTDGAPREPESAA HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure MQTLAFAPGPAFLSRAADAAWRFLDAHAQSPGTATIVVPTAAQIPGVRSALHANAQAAGT CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCHHHHHHCCCCCCCC PRLLPRILTLGHWLLDLPPEAGSPAGRTPLSRLLAVQQALKTQAWLREALGAQDDAALWG HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH VAQVLVTVSDELSQRWLTLDAAHSGADRRPDALESALAEALERTYAQLSERFLGTESRIV HHHHHHHHHHHHHHHHEEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH LTFWRLLSGAADPIPMRLRAMRRLLDELHGPIVWMSPSDPEAVDLDFLQRAAERVPVLSI HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCEEEE GYDWNAPEAGTSATPSTHADFRDLLLHAWPECATAAQAADDGADARMQAPILRIAGATRF CCCCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHCCHHHHCCCCCC EDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDETGWKLSTTRAA CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHH AALMRWVDVVQGDGDTAALLDLVKSPFCLRDADAGTATPAWVAELERRVRRHNVSGGWGR HHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHH LRRLVADRPANDADADADGEAKVSRLADRLGVLADEAALWRRVGSATLDAWVTLLAGTLD HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RLHMRTGLQNDDAGRQLLDWIDRLRASIHGSTDAGARFSLTEWRALLSMLLESAVFSEPS HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCC PPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPEWLFFSNDVRRELGLPDRAQRF CCCCCEEEEEECCCCHHHHHCCEEEECCCCCCCCCCCCCEEEECCHHHHHCCCCHHHHHH AQQARDLAEVLLNQPEVVLTWQRHGGRGEPHRLSGWLERLQRRLAVCGVRIDTSVVLPSL HHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEECCHHCCCCC QTTSQPAGMPAPAAPVLVPSTLSAAAYNSLRRCPYQFFVGRMLRLGELEEVSDELEKRDI CCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHH GEILHAILHRFHRQLLEVPMHDPADRQALLQAITDEQFGPLLAEDGNALRFYRRWLGVMP HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCH SYLAWQAAREADGWRFEAGEVDVDTSITLRDERPLRLRGRIDRIDVHDEHGVAVLDYKTQ HHHHHHHHHCCCCCEEECCCEECCCEEEECCCCCCEECCCCCEEEECCCCCEEEEEECCC SQMVLVRRAKAPFEDCQLPFYGVLDARAVAGGWVSLDGEARGDKRDVALPDFTQVVDWLI CHHHHHHHHCCCHHHCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHH EQMQKDMTALSAGAPLPAFGDESACRYCAARGLCRKGYWTDGAPREPESAA HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA